Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HM13-IT1 Gene

Subcategory (RNA class) for HM13-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HM13-IT1 Gene

  • HM13 Intronic Transcript 1 2 3 5
  • HM13 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HM13-IT1 Gene

Previous GeneCards Identifiers for HM13-IT1 Gene

  • GC00U933699
  • GC20P030151

Summaries for HM13-IT1 Gene

GeneCards Summary for HM13-IT1 Gene

HM13-IT1 (HM13 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HM13-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HM13-IT1 Gene

Genomics for HM13-IT1 Gene

GeneHancer (GH) Regulatory Elements for HM13-IT1 Gene

Promoters and enhancers for HM13-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I031558 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.7 -1683 6.6 HDGF ATF1 ZFP64 ARID4B SIN3A ZNF48 ETS1 ZNF766 ARID2 ZNF143 HM13-IT1 HM13 ID1 BCL2L1 COX4I2 DEFB124 MYLK2 HCK MCTS2P
GH20I031565 Promoter/Enhancer 2 Ensembl ENCODE dbSUPER 0.4 +7.0 7024 9.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 PIR57123 ASXL1 TM9SF4 HM13 COX4I2 ID1 MCTS2P PLAGL2 MYLK2 HM13-AS1
GH20I031546 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.4 -13.3 -13291 7.4 PKNOX1 ATF1 FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 BRCA1 HM13 COX4I2 ID1 HM13-AS1 RNU6-384P TM9SF4 ASXL1 DEFB124 MCTS2P HM13-IT1
GH20I031556 Enhancer 0.8 ENCODE dbSUPER 0.4 -5.9 -5888 1.7 SCRT1 CTCF ZNF654 RAD21 ZBTB48 POLR2A IKZF1 ZNF143 SMC3 ZNF600 COX4I2 ID1 RNU6-384P MYLK2 HM13-IT1 MCTS2P HM13
GH20I031554 Enhancer 0.5 ENCODE 0.4 -7.9 -7864 1.2 PAF1 POLR2A MYNN CBFA2T3 ZNF600 SUPT5H HM13 ID1 RNU6-384P COX4I2 MYLK2 MCTS2P HM13-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HM13-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HM13-IT1 Gene

Genomic Locations for HM13-IT1 Gene
chr20:31,563,166-31,564,076
(GRCh38/hg38)
Size:
911 bases
Orientation:
Plus strand
chr20:30,150,969-30,151,879
(GRCh37/hg19)

Genomic View for HM13-IT1 Gene

Genes around HM13-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HM13-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HM13-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HM13-IT1 Gene

Proteins for HM13-IT1 Gene

Post-translational modifications for HM13-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HM13-IT1 Gene

Domains & Families for HM13-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HM13-IT1 Gene

Function for HM13-IT1 Gene

Phenotypes From GWAS Catalog for HM13-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HM13-IT1 Gene

Localization for HM13-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HM13-IT1 Gene

Pathways & Interactions for HM13-IT1 Gene

SuperPathways for HM13-IT1 Gene

No Data Available

Interacting Proteins for HM13-IT1 Gene

Gene Ontology (GO) - Biological Process for HM13-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HM13-IT1 Gene

Drugs & Compounds for HM13-IT1 Gene

No Compound Related Data Available

Transcripts for HM13-IT1 Gene

mRNA/cDNA for HM13-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HM13-IT1 Gene

No ASD Table

Relevant External Links for HM13-IT1 Gene

GeneLoc Exon Structure for
HM13-IT1
ECgene alternative splicing isoforms for
HM13-IT1

Expression for HM13-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HM13-IT1 Gene

genes like me logo Genes that share expression patterns with HM13-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HM13-IT1 Gene

Orthologs for HM13-IT1 Gene

Evolution for HM13-IT1 Gene

ENSEMBL:
Gene Tree for HM13-IT1 (if available)
TreeFam:
Gene Tree for HM13-IT1 (if available)

No data available for Orthologs for HM13-IT1 Gene

Paralogs for HM13-IT1 Gene

No data available for Paralogs for HM13-IT1 Gene

Variants for HM13-IT1 Gene

Additional Variant Information for HM13-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HM13-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HM13-IT1 Gene

Disorders for HM13-IT1 Gene

No disorders were found for HM13-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HM13-IT1 Gene

Publications for HM13-IT1 Gene

No publications were found for HM13-IT1 Gene.

Products for HM13-IT1 Gene

Sources for HM13-IT1 Gene

Content
Loading form....