Aliases for HLX-AS1 Gene

Subcategory (RNA class) for HLX-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HLX-AS1 Gene

  • HLX Antisense RNA 1 2 3 5
  • HLX-AS1 2 5 165
  • NONHSAG004359.2 91
  • HSALNG0010765 164

External Ids for HLX-AS1 Gene

Previous GeneCards Identifiers for HLX-AS1 Gene

  • GC01M221009

Summaries for HLX-AS1 Gene

GeneCards Summary for HLX-AS1 Gene

HLX-AS1 (HLX Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HLX-AS1 include Wolf-Hirschhorn Syndrome.

Additional gene information for HLX-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLX-AS1 Gene

Genomics for HLX-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HLX-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLX-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HLX-AS1 Gene

Genomic Locations for HLX-AS1 Gene
chr1:220,832,763-220,880,251
(GRCh38/hg38)
Size:
47,489 bases
Orientation:
Minus strand
chr1:221,006,105-221,053,482
(GRCh37/hg19)
Size:
47,378 bases
Orientation:
Minus strand

Genomic View for HLX-AS1 Gene

Genes around HLX-AS1 on UCSC Golden Path with GeneCards custom track
HLX-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HLX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLX-AS1 Gene

Proteins for HLX-AS1 Gene

Post-translational modifications for HLX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLX-AS1 Gene

Domains & Families for HLX-AS1 Gene

Gene Families for HLX-AS1 Gene

genes like me logo Genes that share domains with HLX-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLX-AS1 Gene

Function for HLX-AS1 Gene

Phenotypes From GWAS Catalog for HLX-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLX-AS1 Gene

Localization for HLX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLX-AS1 Gene

Pathways & Interactions for HLX-AS1 Gene

PathCards logo

SuperPathways for HLX-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HLX-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HLX-AS1 Gene

Drugs & Compounds for HLX-AS1 Gene

No Compound Related Data Available

Transcripts for HLX-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HLX-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C2BF8_9606 lncRNA 563 6

HGNC: 42509,

RefSeq: NR_046901,

Ensembl: ENST00000552026 (view in UCSC) ,

LncBook: HSALNT0022304,

LNCipedia: HLX-AS1:1,

NONCODE: NONHSAT009623.2,

URS0000D5C088_9606 lncRNA 1335 2

LncBook: HSALNT0022311,

LNCipedia: HLX-AS1:4,

URS0000D59FC5_9606 lncRNA 781 2

LncBook: HSALNT0022308,

LNCipedia: HLX-AS1:2,

URS0000D5E35C_9606 lncRNA 674 2

LncBook: HSALNT0022305,

LNCipedia: HLX-AS1:5,

URS0000D57055_9606 lncRNA 8938 1

LNCipedia: HLX-AS1:3,

HLX-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HLX-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HLX-AS1 Gene

No ASD Table

Relevant External Links for HLX-AS1 Gene

GeneLoc Exon Structure for
HLX-AS1

Expression for HLX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HLX-AS1 Gene

This gene is overexpressed in Whole Blood (x6.2) and Colon - Sigmoid (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HLX-AS1

genes like me logo Genes that share expression patterns with HLX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLX-AS1 Gene

Orthologs for HLX-AS1 Gene

Evolution for HLX-AS1 Gene

ENSEMBL:
Gene Tree for HLX-AS1 (if available)
TreeFam:
Gene Tree for HLX-AS1 (if available)

No data available for Orthologs for HLX-AS1 Gene

Paralogs for HLX-AS1 Gene

No data available for Paralogs for HLX-AS1 Gene

Variants for HLX-AS1 Gene

Additional dbSNP identifiers (rs#s) for HLX-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HLX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv819685 CNV gain 19587683

Additional Variant Information for HLX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HLX-AS1 Gene

Disorders for HLX-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HLX-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
wolf-hirschhorn syndrome
  • whs
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with HLX-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HLX-AS1 Gene

Publications for HLX-AS1 Gene

  1. Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients. (PMID: 21326311) Bhatnagar P … Keefer JR (Journal of human genetics 2011) 3
  2. Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. (PMID: 20445134) Smith NL … Vasan RS (Circulation. Cardiovascular genetics 2010) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for HLX-AS1 Gene

Sources for HLX-AS1 Gene