Aliases for HLTF-AS1 Gene

Subcategory (RNA class) for HLTF-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for HLTF-AS1 Gene

  • HLTF Antisense RNA 1 2 3 5
  • HLTF Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0029712 167
  • NONHSAG036343 92
  • HLTF-AS1 2

External Ids for HLTF-AS1 Gene

Previous GeneCards Identifiers for HLTF-AS1 Gene

  • GC00U933488
  • GC03P148805

Summaries for HLTF-AS1 Gene

GeneCards Summary for HLTF-AS1 Gene

HLTF-AS1 (HLTF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HLTF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLTF-AS1 Gene

Genomics for HLTF-AS1 Gene

GeneHancer (GH) Regulatory Elements for HLTF-AS1 Gene

Promoters and enhancers for HLTF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J149085 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 -0.3 -332 2.8 ZNF217 EP300 NRF1 MYC TCF12 POLR2G SP1 GTF2E2 PHF8 PHB2 HLTF HLTF-AS1 lnc-CP-2 PFN2 lnc-CP-3
GH03J149144 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 10.6 +60.1 60092 3.5 NR2F2 SPI1 ELF1 EBF1 ETV6 SP1 HLTF HLTF-AS1 GYG1 HPS3 RF00994-690 lnc-HLTF-5
GH03J149042 Enhancer 0.7 Ensembl ENCODE 11.5 -42.7 -42659 2.5 FOS JUND PRDM1 ATF2 TBX21 JUNB HLF ATF7 ZNF384 FOXA1 HLTF HLTF-AS1 GYG1 UBQLN4P1 lnc-CP-4 piR-34822-233
GH03J149095 Enhancer 0.9 Ensembl ENCODE 0.4 +9.5 9469 1.6 EP300 TRIM22 BCL11A MEF2B NBN SPI1 BATF IRF4 IKZF1 BMI1 ENSG00000201031 piR-39099-169 HPS3 HLTF TM4SF18 GYG1 HLTF-AS1
GH03J149090 Enhancer 0.5 Ensembl 0.7 +4.6 4569 0.2 MEF2C BCL11A MEF2B ATF4 CREM ATF3 MEF2A YY1 BCLAF1 RUNX3 HPS3 TM4SF18 HLTF ENSG00000201031 HLTF-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLTF-AS1 Gene

Genomic Locations for HLTF-AS1 Gene
chr3:149,086,332-149,102,823
(GRCh38/hg38)
Size:
16,492 bases
Orientation:
Plus strand
chr3:148,804,119-148,820,610
(GRCh37/hg19)
Size:
16,492 bases
Orientation:
Plus strand

Genomic View for HLTF-AS1 Gene

Genes around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLTF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLTF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLTF-AS1 Gene

Proteins for HLTF-AS1 Gene

Post-translational modifications for HLTF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLTF-AS1 Gene

Domains & Families for HLTF-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLTF-AS1 Gene

Function for HLTF-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLTF-AS1 Gene

Localization for HLTF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLTF-AS1 Gene

Pathways & Interactions for HLTF-AS1 Gene

PathCards logo

SuperPathways for HLTF-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HLTF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HLTF-AS1 Gene

Drugs & Compounds for HLTF-AS1 Gene

No Compound Related Data Available

Transcripts for HLTF-AS1 Gene

mRNA/cDNA for HLTF-AS1 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLTF-AS1 Gene

No ASD Table

Relevant External Links for HLTF-AS1 Gene

GeneLoc Exon Structure for
HLTF-AS1

Expression for HLTF-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLTF-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HLTF-AS1

SOURCE GeneReport for Unigene cluster for HLTF-AS1 Gene:

Hs.742423
genes like me logo Genes that share expression patterns with HLTF-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLTF-AS1 Gene

Orthologs for HLTF-AS1 Gene

Evolution for HLTF-AS1 Gene

ENSEMBL:
Gene Tree for HLTF-AS1 (if available)
TreeFam:
Gene Tree for HLTF-AS1 (if available)

No data available for Orthologs for HLTF-AS1 Gene

Paralogs for HLTF-AS1 Gene

No data available for Paralogs for HLTF-AS1 Gene

Variants for HLTF-AS1 Gene

Additional dbSNP identifiers (rs#s) for HLTF-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HLTF-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726036 CNV deletion 23290073
nsv528849 CNV gain 19592680
nsv829753 CNV gain 17160897

Additional Variant Information for HLTF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLTF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HLTF-AS1 Gene

Disorders for HLTF-AS1 Gene

Additional Disease Information for HLTF-AS1

No disorders were found for HLTF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLTF-AS1 Gene

Publications for HLTF-AS1 Gene

No publications were found for HLTF-AS1 Gene.

No data available for Mastermind for HLTF-AS1 Gene

Products for HLTF-AS1 Gene

Sources for HLTF-AS1 Gene