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Aliases for HLCS-IT1 Gene
Subcategory (RNA class) for HLCS-IT1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for HLCS-IT1 Gene
External Ids for HLCS-IT1 Gene
- HGNC: 41343
- Entrez Gene: 100874294
- Ensembl: ENSG00000237646
Previous GeneCards Identifiers for HLCS-IT1 Gene
- GC00U932982
- GC21M038177
Summaries for HLCS-IT1 Gene
GeneCards Summary for HLCS-IT1 Gene
HLCS-IT1 (HLCS Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for HLCS-IT1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLCS-IT1 Gene
Genomics for HLCS-IT1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for HLCS-IT1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH21J036806 | Enhancer | 0.3 | ENCODE | 600.7 | -1.3 | -1284 | 1.4 | CEBPB NR3C1 | HLCS-IT1 ENSG00000224269 SIM2 HLCS LOC105369305 RF00017-3703 | |
| GH21J036787 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +17.9 | 17884 | 1.6 | PRDM10 ZNF692 FOXA1 PRDM1 ZIC2 ZNF600 ZNF341 SMARCC2 CEBPB JUN | ENSG00000242553 HLCS SIM2 RF00017-3704 HLCS-IT1 RF00017-3703 | |
| GH21J036783 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +21.6 | 21584 | 2.6 | PRDM10 ZNF629 ZNF692 ZSCAN4 ZNF239 ZNF639 JUND ZNF10 CEBPB ZEB1 | DYRK1A ENSG00000242553 SETD4 MORC3 SIM2 RF00017-3704 HLCS-IT1 RF00017-3703 HLCS | |
| GH21J036792 | Enhancer | 0.8 | Ensembl ENCODE | 0.4 | +14.1 | 14084 | 2 | EZH2 ZNF600 SCRT2 MNT SCRT1 POLR2A USF2 ZSCAN5A ATF3 TOE1 | ENSG00000224269 SIM2 CLDN14 HLCS HLCS-IT1 RF00017-3704 RF00017-3703 | |
| GH21J036799 | Enhancer | 0.3 | ENCODE | 0.4 | +6.3 | 6329 | 0.7 | BHLHE40 | CLDN14 HLCS HLCS-IT1 RF00017-3704 RF00017-3703 SIM2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HLCS-IT1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for HLCS-IT1 Gene
Genomic Locations for HLCS-IT1 Gene
- chr21:36,802,590-36,806,285
- (GRCh38/hg38)
- Size:
- 3,696 bases
- Orientation:
- Minus strand
- chr21:38,176,285-38,178,585
- (GRCh37/hg19)
- Size:
- 2,301 bases
- Orientation:
- Minus strand
Genomic View for HLCS-IT1 Gene
Genes around HLCS-IT1 on UCSC Golden Path with GeneCards custom track
HLCS-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 21q22.13 by HGNC
- 21q22.13 by Entrez Gene
- 21q22.13 by Ensembl
HLCS-IT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for HLCS-IT1 Gene
Proteins for HLCS-IT1 Gene
Post-translational modifications for HLCS-IT1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLCS-IT1
- Origene Custom Protein Services for HLCS-IT1
No data available for DME Specific Peptides for HLCS-IT1 Gene
Domains & Families for HLCS-IT1 Gene
Gene Families for HLCS-IT1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLCS-IT1 Gene
Function for HLCS-IT1 Gene
Phenotypes From GWAS Catalog for HLCS-IT1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HLCS-IT1 - Select products 50% OFF >
- * HLCS-IT1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for HLCS-IT1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for HLCS-IT1 - Select products 50% OFF >
- * HLCS-IT1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLCS-IT1 Gene
Localization for HLCS-IT1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLCS-IT1 Gene
Transcripts for HLCS-IT1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for HLCS-IT1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005E7179_9606 | lncRNA | 531 | 5 |
HGNC: 41343, Ensembl: ENST00000434195 (view in UCSC) , LncBook: HSALNT0273331, LNCipedia: HLCS-IT1:1, NONCODE: NONHSAT081992.2, |
| URS00009AD429_9606 | lncRNA | 651 | 2 |
LncBook: HSALNT0273330, NONCODE: NONHSAT191449.1, |
HLCS-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for HLCS-IT1 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HLCS-IT1 - Select products 50% OFF >
- * HLCS-IT1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for HLCS-IT1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for HLCS-IT1 - Select products 50% OFF >
- * HLCS-IT1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for HLCS-IT1 Gene
- GeneLoc Exon Structure for
- HLCS-IT1
Expression for HLCS-IT1 Gene
mRNA differential expression in normal tissues according to GTEx for HLCS-IT1 Gene
This gene is overexpressed in Testis (x9.6).
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLCS-IT1 Gene
Orthologs for HLCS-IT1 Gene
No data available for Orthologs for HLCS-IT1 Gene
Paralogs for HLCS-IT1 Gene
No data available for Paralogs for HLCS-IT1 Gene
Variants for HLCS-IT1 Gene
Additional Variant Information for HLCS-IT1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HLCS-IT1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLCS-IT1 Gene
Disorders for HLCS-IT1 Gene
Additional Disease Information for HLCS-IT1
No disorders were found for HLCS-IT1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLCS-IT1 Gene
Publications for HLCS-IT1 Gene
No publications were found for HLCS-IT1 Gene.
ExternalLinks
Products for HLCS-IT1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLCS-IT1
- Origene Custom Protein Services for HLCS-IT1
- Browse OriGene Inhibitory RNA Products For HLCS-IT1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HLCS-IT1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HLCS-IT1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for HLCS-IT1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for HLCS-IT1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for HLCS-IT1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for HLCS-IT1
Sources for HLCS-IT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB