Aliases for HLA-U Gene

Aliases for HLA-U Gene

  • Major Histocompatibility Complex, Class I, U (Pseudogene) 2 3 5
  • HLA-21 Pseudogene 2 3
  • HLA-21 3

External Ids for HLA-U Gene

Previous HGNC Symbols for HLA-U Gene

  • HLA-21

Previous GeneCards Identifiers for HLA-U Gene

  • GC06P030010
  • GC06P029917
  • GC06P029919
  • GC06P029699
  • GC06P029932
  • GC06P029948
  • GC06P030185
  • GC06P030201
  • GC06P030240
  • GC06P032252
  • GC06P032427
  • GC06P030350
  • GC06P030503
  • GC06P030706
  • GC06P030867
  • GC06P031024
  • GC06P031178
  • GC06P031360
  • GC06P031751

Summaries for HLA-U Gene

GeneCards Summary for HLA-U Gene

HLA-U (Major Histocompatibility Complex, Class I, U (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-U Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLA-U Gene

Genomics for HLA-U Gene

GeneHancer (GH) Regulatory Elements for HLA-U Gene

Promoters and enhancers for HLA-U Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030611 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 37.8 +681.8 681829 8.6 PPP1R10 FOXK2 ZBTB40 SP1 CTCF LCORL MLX RBPJ SMARCE1 POLR2A MRPS18B PPP1R10 DDX39B MDC1 TRIM39 DHX16 ABCF1 ZNRD1 GTF2H4 PAIP1P1
GH06J030715 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 34.2 +786.3 786269 8.7 E2F8 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SIX5 ZBTB6 FOXA1 NONHSAG043429.2 TUBB piR-37163-002 DDX39B MDC1 LY6G5B TRIM39 DHX16 PPP1R10 HCG18
GH06J030210 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 30.4 +279.7 279667 5.1 ZNF24 SP1 MLX RBPJ POLR2A NR2F1 NR2F6 ATF1 CREB1 MIXL1 TRIM26 lnc-TRIM10-1 lnc-TRIM15-2 piR-32264 HLA-U TRIM31 MICD NRM HLA-A ZNRD1
GH06J030162 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 35.7 +230.0 230021 2.8 LCORL RBPJ NR2F6 CREB1 ZNF362 NFYC ZNF121 TEAD4 MNT ELF3 TRIM10 TRIM15 piR-61101-576 HCG18 MDC1 GTF2H4 PPP1R10 HLA-U ZNRD1ASP ENSG00000230521
GH06J030913 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 23.9 +980.7 980677 3.3 SP1 ZBTB40 CTCF ZBTB6 MLX SMARCE1 RBPJ POLR2A NR2F1 RUNX1 VARS2 DDX39B TRIM39 LSM2 NRM ZNRD1 DHX16 LY6G5B MICA MDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLA-U on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-U Gene

Genomic Locations for HLA-U Gene
chr6:29,933,764-29,934,880
(GRCh38/hg38)
Size:
1,117 bases
Orientation:
Plus strand
chr6:29,901,541-29,902,657
(GRCh37/hg19)
Size:
1,117 bases
Orientation:
Plus strand

Genomic View for HLA-U Gene

Genes around HLA-U on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-U Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-U Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLA-U Gene

Proteins for HLA-U Gene

No data available for DME Specific Peptides for HLA-U Gene

Domains & Families for HLA-U Gene

Gene Families for HLA-U Gene

genes like me logo Genes that share domains with HLA-U: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLA-U Gene

Function for HLA-U Gene

Phenotypes From GWAS Catalog for HLA-U Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-U Gene

Localization for HLA-U Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-U Gene

Pathways & Interactions for HLA-U Gene

PathCards logo

SuperPathways for HLA-U Gene

No Data Available

Gene Ontology (GO) - Biological Process for HLA-U Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-U Gene

Drugs & Compounds for HLA-U Gene

No Compound Related Data Available

Transcripts for HLA-U Gene

mRNA/cDNA for HLA-U Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-U Gene

No ASD Table

Relevant External Links for HLA-U Gene

GeneLoc Exon Structure for
HLA-U
ECgene alternative splicing isoforms for
HLA-U

Expression for HLA-U Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-U Gene

mRNA differential expression in normal tissues according to GTEx for HLA-U Gene

This gene is overexpressed in Whole Blood (x9.3).
genes like me logo Genes that share expression patterns with HLA-U: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-U Gene

Orthologs for HLA-U Gene

Evolution for HLA-U Gene

ENSEMBL:
Gene Tree for HLA-U (if available)
TreeFam:
Gene Tree for HLA-U (if available)

No data available for Orthologs for HLA-U Gene

Paralogs for HLA-U Gene

No data available for Paralogs for HLA-U Gene

Variants for HLA-U Gene

Additional Variant Information for HLA-U Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-U

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-U Gene

Disorders for HLA-U Gene

No disorders were found for HLA-U Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HLA-U Gene

Publications for HLA-U Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3 56
  2. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty DE … Orr HT (Journal of immunology (Baltimore, Md. : 1950) 1992) 3 56

Products for HLA-U Gene

Sources for HLA-U Gene