Aliases for HLA-K Gene

Aliases for HLA-K Gene

  • Major Histocompatibility Complex, Class I, K (Pseudogene) 2 3 5
  • HLA-70 2 3
  • HLA70 3
  • HLA-K 5
  • HLAK 3

External Ids for HLA-K Gene

Previous HGNC Symbols for HLA-K Gene

  • HLAK
  • HLA70

Previous GeneCards Identifiers for HLA-K Gene

  • GC06U990058
  • GC06P030000
  • GC06P030003
  • GC06P029896
  • GC06P029898
  • GC06P029899
  • GC06P029927
  • GC06P029946
  • GC06P030183
  • GC06P030197
  • GC06P030232
  • GC06P032250
  • GC06P032425
  • GC06P032559
  • GC06P033209
  • GC06P030348
  • GC06P030501
  • GC06P030699
  • GC06P030860
  • GC06P031020
  • GC06P031176
  • GC06P031355
  • GC06P031681
  • GC06P047263
  • GC06P049309

Summaries for HLA-K Gene

GeneCards Summary for HLA-K Gene

HLA-K (Major Histocompatibility Complex, Class I, K (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-K Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLA-K Gene

Genomics for HLA-K Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HLA-K Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLA-K on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HLA-K Gene

Latest Assembly
chr6:29,926,459-29,929,825
(GRCh38/hg38)
Size:
3,367 bases
Orientation:
Plus strand

Previous Assembly
chr6:29,894,436-29,897,602
(GRCh37/hg19 by Entrez Gene)
Size:
3,167 bases
Orientation:
Plus strand

chr6:29,894,236-29,897,009
(GRCh37/hg19 by Ensembl)
Size:
2,774 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr6(ALT_REF_LOCI_1):1,186,855-1,197,373 (+)
  • chr6(ALT_REF_LOCI_2):1,408,529-1,419,048 (+)
  • chr6(ALT_REF_LOCI_3):1,183,386-1,190,200 (+)
  • chr6(ALT_REF_LOCI_4):1,181,364-1,187,148 (+)
  • chr6(ALT_REF_LOCI_6):1,181,381-1,189,348 (+)
  • chr6(ALT_REF_LOCI_7):1,224,530-1,229,530 (+)

Genomic View for HLA-K Gene

Genes around HLA-K on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-K Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-K Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-K Gene

Post-translational modifications for HLA-K Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-K Gene

Domains & Families for HLA-K Gene

Gene Families for HLA-K Gene

genes like me logo Genes that share domains with HLA-K: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLA-K Gene

Function for HLA-K Gene

Molecular function for HLA-K Gene

GENATLAS Biochemistry:
HLA class I-like gene K,7.0 Hind III fragment,see MHC1

Phenotypes From GWAS Catalog for HLA-K Gene

genes like me logo Genes that share phenotypes with HLA-K: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-K Gene

Localization for HLA-K Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-K Gene

Pathways & Interactions for HLA-K Gene

PathCards logo

SuperPathways for HLA-K Gene

No Data Available

Gene Ontology (GO) - Biological Process for HLA-K Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HLA-K Gene

Drugs & Compounds for HLA-K Gene

No Compound Related Data Available

Transcripts for HLA-K Gene

mRNA/cDNA for HLA-K Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-K Gene

No ASD Table

Relevant External Links for HLA-K Gene

GeneLoc Exon Structure for
HLA-K

Expression for HLA-K Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-K Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HLA-K

genes like me logo Genes that share expression patterns with HLA-K: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-K Gene

Orthologs for HLA-K Gene

Evolution for HLA-K Gene

ENSEMBL:
Gene Tree for HLA-K (if available)
TreeFam:
Gene Tree for HLA-K (if available)
Alliance of Genome Resources:
Additional Orthologs for HLA-K

No data available for Orthologs for HLA-K Gene

Paralogs for HLA-K Gene

No data available for Paralogs for HLA-K Gene

Variants for HLA-K Gene

Additional Variant Information for HLA-K Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-K
Leiden Open Variation Database (LOVD)
HLA-K

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-K Gene

Disorders for HLA-K Gene

Additional Disease Information for HLA-K

No disorders were found for HLA-K Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-K Gene

Publications for HLA-K Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 40
  2. Examination of four HLA class I pseudogenes. Common events in the evolution of HLA genes and pseudogenes. (PMID: 1517564) Geraghty DE … Hansen JA (Journal of immunology (Baltimore, Md. : 1950) 1992) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for HLA-K Gene

Sources for HLA-K Gene