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HLA-K Gene(Pseudogene)

Major Histocompatibility Complex, Class I, K (Pseudogene)

GCID:
GC06P031176
GIFtS:
14
Genes Participants
UDN Logo

Aliases for HLA-K Gene

Aliases for HLA-K Gene

  • Major Histocompatibility Complex, Class I, K (Pseudogene) 2 3 5
  • HLA-70 3
  • HLA70 3
  • HLAK 3

External Ids for HLA-K Gene

Previous HGNC Symbols for HLA-K Gene

  • HLAK
  • HLA70

Previous GeneCards Identifiers for HLA-K Gene

  • GC06U990058
  • GC06P030000
  • GC06P030003
  • GC06P029896
  • GC06P029898
  • GC06P029899
  • GC06P029927
  • GC06P029946
  • GC06P030183
  • GC06P030197
  • GC06P030232
  • GC06P030348
  • GC06P030501
  • GC06P030699
  • GC06P030860
  • GC06P031020

Summaries for HLA-K Gene

GeneCards Summary for HLA-K Gene

HLA-K (Major Histocompatibility Complex, Class I, K (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-K Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-K Gene

Genomics for HLA-K Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for HLA-K Gene

Promoters and enhancers for HLA-K Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06I029924 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 572.6 -0.4 -386 3.6 MLX ARID4B DMAP1 RFX5 YY1 KLF11 RXRA SMAD5 CEBPB USF2 HLA-K GC06M030352 HCG4B HLA-A MICD ZFP57 HLA-J HLA-H HCG4P3 RPL23AP1
GH06I029940 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 41.6 +15.8 15802 3.7 HDGF PKNOX1 SMAD1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143 ATF7 HLA-A HCG4P5 PIR61557 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HCG4P3
GH06I030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 34 +793.1 793067 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B TRIM39 DHX16 LY6G5B PPP1R10 ZNRD1 PAIP1P1 NRM
GH06I029963 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 37.5 +39.8 39790 4.8 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 HLA-A HLA-K HCG4P3 ZNRD1 HLA-W TRIM39 HLA-H PPP1R10 MDC1 DHX16
GH06I028977 Promoter/Enhancer 2 Ensembl ENCODE dbSUPER 29 -946.1 -946084 6.5 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D TRE-CTC1-6 TRF-GAA1-2 ZKSCAN3 ZKSCAN8 TRIM27 ZKSCAN4 ZSCAN12 ZSCAN23 HLA-K ZSCAN9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLA-K on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-K Gene

Genomic Locations for HLA-K Gene
chr6:29,926,459-29,929,839
(GRCh38/hg38)
Size:
3,381 bases
Orientation:
Plus strand
chr6:29,894,236-29,897,616
(GRCh37/hg19)

Genomic View for HLA-K Gene

Genes around HLA-K on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-K Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-K Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HLA-K Gene

Proteins for HLA-K Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HLA-K Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-K Gene

Domains & Families for HLA-K Gene

Gene Families for HLA-K Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-K: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-K Gene

Function for HLA-K Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for HLA-K Gene

GENATLAS Biochemistry:
HLA class I-like gene K,7.0 Hind III fragment,see MHC1

Phenotypes From GWAS Catalog for HLA-K Gene

Phenotypes for HLA-K Gene

GenomeRNAi human phenotypes for HLA-K:
genes like me logo Genes that share phenotypes with HLA-K: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-K Gene

Localization for HLA-K Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-K Gene

Pathways & Interactions for HLA-K Gene

SuperPathways for HLA-K Gene

PathCards logo More details on SuperPathways for HLA-K
No Data Available

Interacting Proteins for HLA-K Gene

Gene Ontology (GO) - Biological Process for HLA-K Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-K Gene

Drugs & Compounds for HLA-K Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HLA-K Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HLA-K Gene

(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-K Gene

No ASD Table

Relevant External Links for HLA-K Gene

GeneLoc Exon Structure for
HLA-K
ECgene alternative splicing isoforms for
HLA-K

Expression for HLA-K Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-K Gene

mRNA expression in normal human tissues for HLA-K Gene
mRNA expression by GTEx for HLA-K Gene
genes like me logo Genes that share expression patterns with HLA-K: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-K Gene

Orthologs for HLA-K Gene

Evolution for HLA-K Gene

ENSEMBL:
Gene Tree for HLA-K (if available)
TreeFam:
Gene Tree for HLA-K (if available)

No data available for Orthologs for HLA-K Gene

Paralogs for HLA-K Gene

No data available for Paralogs for HLA-K Gene

Variants for HLA-K Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for HLA-K Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-K

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-K Gene

Disorders for HLA-K Gene

Additional Disease Information for HLA-K

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HLA-K Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-K Gene

Publications for HLA-K Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 44 58
  2. Examination of four HLA class I pseudogenes. Common events in the evolution of HLA genes and pseudogenes. (PMID: 1517564) Geraghty DE … Hansen JA (Journal of immunology (Baltimore, Md. : 1950) 1992) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for HLA-K Gene

Sources for HLA-K Gene

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