HLA-K Gene (Pseudogene)

Major Histocompatibility Complex, Class I, K (Pseudogene)

GC06P051906
GIFtS:
12
See more...

Aliases for HLA-K Gene

Aliases for HLA-K Gene

  • Major Histocompatibility Complex, Class I, K (Pseudogene) 2 3 5
  • HLA-70 2 3
  • HLA70 3
  • HLA-K 5
  • HLAK 3

External Ids for HLA-K Gene

Previous HGNC Symbols for HLA-K Gene

  • HLAK
  • HLA70

Previous GeneCards Identifiers for HLA-K Gene

  • GC06U990058
  • GC06P030000
  • GC06P030003
  • GC06P029896
  • GC06P029898
  • GC06P029899
  • GC06P029927
  • GC06P029946
  • GC06P030183
  • GC06P030197
  • GC06P030232
  • GC06P032250
  • GC06P032425
  • GC06P032559
  • GC06P033209
  • GC06P030348
  • GC06P030501
  • GC06P030699
  • GC06P030860
  • GC06P031020
  • GC06P031176
  • GC06P031355
  • GC06P031681
  • GC06P047263
  • GC06P049309

Summaries for HLA-K Gene

GeneCards Summary for HLA-K Gene

HLA-K (Major Histocompatibility Complex, Class I, K (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-K Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLA-K Gene

Genomics for HLA-K Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HLA-K Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLA-K on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HLA-K Gene

Latest Assembly
chr6:29,926,459-29,929,825
(GRCh38/hg38)
Size:
3,367 bases
Orientation:
Plus strand

Previous Assembly
chr6:29,894,436-29,897,602
(GRCh37/hg19 by Entrez Gene)
Size:
3,167 bases
Orientation:
Plus strand

chr6:29,894,236-29,897,009
(GRCh37/hg19 by Ensembl)
Size:
2,774 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr6(ALT_REF_LOCI_1):1,186,855-1,197,373 (+)
  • chr6(ALT_REF_LOCI_2):1,408,529-1,419,048 (+)
  • chr6(ALT_REF_LOCI_3):1,183,386-1,190,200 (+)
  • chr6(ALT_REF_LOCI_4):1,181,364-1,187,148 (+)
  • chr6(ALT_REF_LOCI_6):1,181,381-1,189,348 (+)
  • chr6(ALT_REF_LOCI_7):1,224,530-1,229,530 (+)

Genomic View for HLA-K Gene

Genes around HLA-K on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-K Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-K Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for HLA-K Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for HLA-K Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-K Gene

Domains & Families for HLA-K Gene

Gene Families for HLA-K Gene

HGNC:
genes like me logo Genes that share domains with HLA-K: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HLA-K Gene

Function for HLA-K Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Molecular function for HLA-K Gene

GENATLAS Biochemistry:
HLA class I-like gene K,7.0 Hind III fragment,see MHC1

Phenotypes From GWAS Catalog for HLA-K Gene

genes like me logo Genes that share phenotypes with HLA-K: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-K Gene

Localization for HLA-K Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-K Gene

Pathways & Interactions for HLA-K Gene

PathCards logo

SuperPathways for HLA-K Gene

No Data Available

Gene Ontology (GO) - Biological Process for HLA-K Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HLA-K Gene

Drugs & Compounds for HLA-K Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for HLA-K Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for HLA-K Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-K Gene

No ASD Table

Relevant External Links for HLA-K Gene

GeneLoc Exon Structure for
HLA-K

Expression for HLA-K Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-K Gene

mRNA expression in normal human tissues for HLA-K Gene
mRNA expression by GTEx for HLA-K Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HLA-K

genes like me logo Genes that share expression patterns with HLA-K: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-K Gene

Orthologs for HLA-K Gene

Evolution for HLA-K Gene

ENSEMBL:
Gene Tree for HLA-K (if available)
TreeFam:
Gene Tree for HLA-K (if available)
Alliance of Genome Resources:
Additional Orthologs for HLA-K

No data available for Orthologs for HLA-K Gene

Paralogs for HLA-K Gene

No data available for Paralogs for HLA-K Gene

Variants for HLA-K Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

Additional Variant Information for HLA-K Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-K
Leiden Open Variation Database (LOVD)
HLA-K

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-K Gene

Disorders for HLA-K Gene

Additional Disease Information for HLA-K

Human Genome Epidemiology Navigator
(HuGE)
Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HLA-K Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-K Gene

Publications for HLA-K Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 40
  2. Examination of four HLA class I pseudogenes. Common events in the evolution of HLA genes and pseudogenes. (PMID: 1517564) Geraghty DE … Hansen JA (Journal of immunology (Baltimore, Md. : 1950) 1992) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for HLA-K gene in Mastermind

Products for HLA-K Gene

Sources for HLA-K Gene