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Aliases for HLA-J Gene

Aliases for HLA-J Gene

  • Major Histocompatibility Complex, Class I, J (Pseudogene) 2 3 5
  • HLA-CDA12 3
  • HLA-59 3
  • D6S203 3
  • CDA12 3

External Ids for HLA-J Gene

Previous HGNC Symbols for HLA-J Gene

  • HLA-CDA12
  • D6S203

Previous GeneCards Identifiers for HLA-J Gene

  • GC06U990057
  • GC06M030029
  • GC06P029857
  • GC06P029905
  • GC06P030018
  • GC06P029908
  • GC06P029909
  • GC06P029910
  • GC06P030082
  • GC06P030073
  • GC06P029979
  • GC06P029984
  • GC06P029989
  • GC06P029998
  • GC06P030190
  • GC06P030222
  • GC06P030260
  • GC06P030359
  • GC06P030507
  • GC06P030714
  • GC06P030872
  • GC06P031032

Summaries for HLA-J Gene

Entrez Gene Summary for HLA-J Gene

  • This major histocompatibility complex gene represents a transcribed pseudogene, possibly derived from HLA-A. [provided by RefSeq, May 2010]

GeneCards Summary for HLA-J Gene

HLA-J (Major Histocompatibility Complex, Class I, J (Pseudogene)) is a Pseudogene. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6.

Additional gene information for HLA-J Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-J Gene

Genomics for HLA-J Gene

GeneHancer (GH) Regulatory Elements for HLA-J Gene

Promoters and enhancers for HLA-J Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I030006 Enhancer 0.5 Ensembl 558.1 +0.9 929 1.7 SUZ12 REST ZNF48 EZH2 HCG4P3 HLA-J ZNRD1 ZNRD1ASP HCG4P7 TRIM31-AS1 TRIM31 HLA-A ETF1P1
GH06I029940 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 94.1 -63.7 -63710 3.7 HDGF PKNOX1 SMAD1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143 ATF7 HLA-A HCG4P5 PIR61557 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HCG4P3
GH06I029722 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 43.3 -281.4 -281388 4.1 SMAD1 GLIS2 ZNF207 ZNF143 FOS NFYC REST NBN KDM1A HNF4A HLA-F HLA-J ZFP57 ZNRD1 HLA-H HCG4P5 IFITM4P HLA-F-AS1 DHX16 MICE
GH06I030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 36.4 +713.6 713555 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B TRIM39 DHX16 LY6G5B PPP1R10 ZNRD1 PAIP1P1 NRM
GH06I029952 Enhancer 0.7 Ensembl ENCODE 93.8 -52.7 -52676 1.3 FOSL1 SP1 JUND JUN ADNP FOSL2 HLA-J HLA-T HLA-K HLA-A HCG4P5 ZFP57 MICD HCG4P3 HCG4P4 PIR61557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLA-J on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HLA-J gene promoter:

Genomic Locations for HLA-J Gene

Genomic Locations for HLA-J Gene
3,986 bases
Plus strand

Genomic View for HLA-J Gene

Genes around HLA-J on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-J Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-J Gene

Post-translational modifications for HLA-J Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-J Gene

Domains & Families for HLA-J Gene

Gene Families for HLA-J Gene

Suggested Antigen Peptide Sequences for HLA-J Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-J: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HLA-J Gene

Function for HLA-J Gene

Molecular function for HLA-J Gene

GENATLAS Biochemistry:
HLA class I-like gene J,5.9 Hind III fragment,see MHC1

Phenotypes From GWAS Catalog for HLA-J Gene

Phenotypes for HLA-J Gene

GenomeRNAi human phenotypes for HLA-J:
genes like me logo Genes that share phenotypes with HLA-J: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-J Gene

Localization for HLA-J Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-J Gene

Pathways & Interactions for HLA-J Gene

genes like me logo Genes that share pathways with HLA-J: view

Pathways by source for HLA-J Gene

1 BioSystems pathway for HLA-J Gene

Interacting Proteins for HLA-J Gene

Gene Ontology (GO) - Biological Process for HLA-J Gene


No data available for SIGNOR curated interactions for HLA-J Gene

Drugs & Compounds for HLA-J Gene

No Compound Related Data Available

Transcripts for HLA-J Gene

mRNA/cDNA for HLA-J Gene

(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-J Gene

Major histocompatibility complex, class I, J (pseudogene):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-J Gene

No ASD Table

Relevant External Links for HLA-J Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLA-J Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-J Gene

mRNA differential expression in normal tissues according to GTEx for HLA-J Gene

This gene is overexpressed in Whole Blood (x7.3).

Protein differential expression in normal tissues from HIPED for HLA-J Gene

This gene is overexpressed in Skin (68.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for HLA-J Gene

Protein tissue co-expression partners for HLA-J Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for HLA-J Gene:

genes like me logo Genes that share expression patterns with HLA-J: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-J Gene

Orthologs for HLA-J Gene

Evolution for HLA-J Gene

Gene Tree for HLA-J (if available)
Gene Tree for HLA-J (if available)

No data available for Orthologs for HLA-J Gene

Paralogs for HLA-J Gene

genes like me logo Genes that share paralogs with HLA-J: view

No data available for Paralogs for HLA-J Gene

Variants for HLA-J Gene

Sequence variations from dbSNP and Humsavar for HLA-J Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000462928 -- 30,004,627(+) TTTTTTTTTT/TTTTTTTTTTT upstream_transcript_variant
rs1000945778 -- 30,009,806(+) G/T non_coding_transcript_variant
rs1001783966 -- 30,009,254(+) C/G intron_variant
rs1003726628 -- 30,007,926(+) T/C intron_variant
rs1005754517 -- 30,007,898(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HLA-J Gene

Variant ID Type Subtype PubMed ID
nsv981126 CNV duplication 23825009
nsv601475 CNV loss 21841781
nsv601264 CNV loss 21841781
nsv508398 CNV deletion 20534489
nsv1144137 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1074389 CNV deletion 25765185
esv3570888 CNV loss 25503493
esv3411275 CNV duplication 20981092
esv2759412 CNV gain+loss 17122850
esv2731778 CNV deletion 23290073
esv2731777 CNV deletion 23290073
esv2641340 CNV deletion 19546169
dgv993e201 CNV deletion 23290073
dgv1088e199 CNV deletion 23128226

Additional Variant Information for HLA-J Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLA-J Gene

Disorders for HLA-J Gene

Additional Disease Information for HLA-J

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HLA-J Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-J Gene

Publications for HLA-J Gene

  1. A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01. (PMID: 20593013) Cree BA … IMSGC (PloS one 2010) 3 44 58
  2. HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A. Implications for the evolution of the HLA-A-related genes. (PMID: 1602142) Messer G … Girdlestone J (Journal of immunology (Baltimore, Md. : 1950) 1992) 2 3 58
  3. Paradoxical downregulation of HLA-A expression by IFNγ associated with schizophrenia and noncoding genes. (PMID: 23083632) Gu S … Wank R (Immunobiology 2013) 3 58
  4. Identification of independent risk loci for Graves' disease within the MHC in the Japanese population. (PMID: 21900946) Nakabayashi K … Shirasawa S (Journal of human genetics 2011) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HLA-J Gene

Sources for HLA-J Gene

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