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Aliases for HLA-F-AS1 Gene

Subcategory (RNA class) for HLA-F-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HLA-F-AS1 Gene

  • HLA-F Antisense RNA 1 2 3 5
  • HLA-F Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for HLA-F-AS1 Gene

Previous GeneCards Identifiers for HLA-F-AS1 Gene

  • GC06M029717
  • GC06M029721
  • GC06M029724
  • GC06M029729
  • GC06M029737
  • GC06M029744
  • GC06M029733
  • GC06M029739
  • GC06M029835
  • GC06M029845
  • GC06M030066
  • GC06M030172
  • GC06M030207
  • GC06M030247

Summaries for HLA-F-AS1 Gene

GeneCards Summary for HLA-F-AS1 Gene

HLA-F-AS1 (HLA-F Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLA-F-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-F-AS1 Gene

Genomics for HLA-F-AS1 Gene

GeneHancer (GH) Regulatory Elements for HLA-F-AS1 Gene

Promoters and enhancers for HLA-F-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029747 Promoter/Enhancer 1.5 Ensembl ENCODE 650.7 +0.2 168 1.9 PKNOX1 SIN3A DMAP1 GLI4 ZNF48 YY1 GLIS2 ZNF207 FOS ATF7 MICE ENSG00000199290 GC06P031464 GC06P032274 HCG9P5 HLA-F-AS1 RPL23AP1 HCG4P5 HLA-A ZNRD1
GH06J030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 44.1 -970.5 -970477 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B LY6G5B TRIM39 DHX16 PPP1R10 ZNRD1 PAIP1P1 NRM
GH06J030611 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 33.8 -866.5 -866503 8.7 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPP1R10 MRPS18B MDC1 DDX39B TRIM39 NRM DHX16 ZNRD1 ABCF1 TRIM26
GH06J030554 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.3 -807.6 -807575 3.6 CLOCK DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SSRP1 GLIS1 GNL1 PIR57735 PRR3 TRIM39 DDX39B MDC1 DHX16 PPP1R10 NRM ZNRD1
GH06J030210 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22.2 -463.8 -463840 4.1 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF213 ZNF143 TRIM26 PIR43263 HLA-U DHX16 HLA-W MICD TRIM39 ZNRD1 PPP1R10 PAIP1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-F-AS1 Gene

Genomic Locations for HLA-F-AS1 Gene
chr6:29,726,601-29,749,049
(GRCh38/hg38)
Size:
22,449 bases
Orientation:
Minus strand
chr6:29,694,378-29,716,826
(GRCh37/hg19)
Size:
22,449 bases
Orientation:
Minus strand

Genomic View for HLA-F-AS1 Gene

Genes around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-F-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-F-AS1 Gene

Post-translational modifications for HLA-F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-F-AS1 Gene

Domains & Families for HLA-F-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Function for HLA-F-AS1 Gene

Phenotypes From GWAS Catalog for HLA-F-AS1 Gene

Phenotypes for HLA-F-AS1 Gene

GenomeRNAi human phenotypes for HLA-F-AS1:
genes like me logo Genes that share phenotypes with HLA-F-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HLA-F-AS1

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-F-AS1 Gene

Localization for HLA-F-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-F-AS1 Gene

Pathways & Interactions for HLA-F-AS1 Gene

SuperPathways for HLA-F-AS1 Gene

No Data Available

Interacting Proteins for HLA-F-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-F-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-F-AS1 Gene

Drugs & Compounds for HLA-F-AS1 Gene

No Compound Related Data Available

Transcripts for HLA-F-AS1 Gene

mRNA/cDNA for HLA-F-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for HLA-F-AS1 Gene

HLA-F antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HLA-F-AS1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-F-AS1 Gene

No ASD Table

Relevant External Links for HLA-F-AS1 Gene

GeneLoc Exon Structure for
HLA-F-AS1
ECgene alternative splicing isoforms for
HLA-F-AS1

Expression for HLA-F-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-F-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLA-F-AS1 Gene:

Hs.646985
genes like me logo Genes that share expression patterns with HLA-F-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-F-AS1 Gene

Orthologs for HLA-F-AS1 Gene

Evolution for HLA-F-AS1 Gene

ENSEMBL:
Gene Tree for HLA-F-AS1 (if available)
TreeFam:
Gene Tree for HLA-F-AS1 (if available)

No data available for Orthologs for HLA-F-AS1 Gene

Paralogs for HLA-F-AS1 Gene

No data available for Paralogs for HLA-F-AS1 Gene

Variants for HLA-F-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-F-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000058587 -- 29,748,528(-) G/A intron_variant
rs1000094516 -- 29,729,008(-) G/C/T intron_variant
rs1000659537 -- 29,750,321(-) C/T upstream_transcript_variant
rs1000846510 -- 29,746,354(-) A/C intron_variant
rs1000940653 -- 29,746,783(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HLA-F-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv992e201 CNV deletion 23290073
esv25966 CNV gain+loss 19812545
esv2731768 CNV deletion 23290073
nsv1074389 CNV deletion 25765185
nsv10809 CNV gain 18304495
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428139 CNV gain 18775914
nsv462673 CNV loss 19166990
nsv507321 OTHER sequence alteration 20534489
nsv508397 CNV deletion 20534489
nsv527368 CNV loss 19592680
nsv601230 CNV loss 21841781
nsv970101 CNV duplication 23825009
nsv970102 CNV duplication 23825009

Additional Variant Information for HLA-F-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-F-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLA-F-AS1 Gene

Disorders for HLA-F-AS1 Gene

Additional Disease Information for HLA-F-AS1

No disorders were found for HLA-F-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-F-AS1 Gene

Publications for HLA-F-AS1 Gene

  1. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S … Sun J (Carcinogenesis 2012) 3 58
  2. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager PL … Oksenberg JR (Nature genetics 2009) 3 58
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for HLA-F-AS1 Gene

Sources for HLA-F-AS1 Gene

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