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Aliases for HLA-DQB1-AS1 Gene

Subcategory (RNA class) for HLA-DQB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HLA-DQB1-AS1 Gene

  • HLA-DQB1 Antisense RNA 1 2 3 5
  • HLA-DQB1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG254F23.5 3

External Ids for HLA-DQB1-AS1 Gene

Previous GeneCards Identifiers for HLA-DQB1-AS1 Gene

  • GC00U933067
  • GC06P032628
  • GC06P032631

Summaries for HLA-DQB1-AS1 Gene

GeneCards Summary for HLA-DQB1-AS1 Gene

HLA-DQB1-AS1 (HLA-DQB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLA-DQB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-DQB1-AS1 Gene

Genomics for HLA-DQB1-AS1 Gene

GeneHancer (GH) Regulatory Elements for HLA-DQB1-AS1 Gene

Promoters and enhancers for HLA-DQB1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J032660 Enhancer 0.7 ENCODE dbSUPER 677.4 +0.2 193 1.5 POLR2A SMAD5 EBF1 MEF2B HLA-DQB1-AS1 HLA-DQA1 HLA-DQB1 HLA-DQB2 HLA-DQA2 CYP21A1P HLA-DRB6 GC06M032664
GH06J032658 Enhancer 0.7 ENCODE dbSUPER 667.6 -1.3 -1281 0.2 POLR2A SMAD5 CBFB NR2F1 NFATC1 SCRT2 BCLAF1 HLA-DQB1-AS1 HLA-DQB2 HLA-DQA1 HLA-DRB6 GC06P032637 GC06P032638
GH06J032659 Enhancer 0.7 ENCODE dbSUPER 657.4 -1.0 -967 0.4 POLR2A TARDBP NR2F1 NFATC1 SCRT2 ZBTB33 BCLAF1 HLA-DQB1-AS1 HLA-DQA1 HLA-DRB1 HLA-DQB2 HLA-DQB1 HLA-DRB6 HLA-DPB1 GC06P032637 GC06P032638
GH06J032664 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 48.9 +7.2 7198 5 PKNOX1 SMAD1 MZF1 STAT5A ZNF2 RFX5 ZNF335 SCRT2 ZNF143 ATF7 HLA-DQB1 GC06M032664 HLA-DQA1 HLA-DQB1-AS1 HLA-DQB2 HLA-DRB1 HLA-DQA2 HLA-DRB6 C4A LY6G5B
GH06J032583 Enhancer 1.3 Ensembl ENCODE dbSUPER 33 -74.6 -74577 3.8 GLI4 ZNF2 GLIS2 KLF7 SP3 YY2 TSHZ1 ZNF518A ZNF658 ZSCAN16 HLA-DRB1 HLA-DRB6 HLA-DQA2 HLA-DRB5 HLA-DQB1-AS1 PPT2 LSM2 BRD2 RXRB TNXB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLA-DQB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-DQB1-AS1 Gene

Genomic Locations for HLA-DQB1-AS1 Gene
chr6:32,659,880-32,660,729
(GRCh38/hg38)
Size:
850 bases
Orientation:
Plus strand

Genomic View for HLA-DQB1-AS1 Gene

Genes around HLA-DQB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-DQB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-DQB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLA-DQB1-AS1 Gene

Proteins for HLA-DQB1-AS1 Gene

Post-translational modifications for HLA-DQB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-DQB1-AS1 Gene

Domains & Families for HLA-DQB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-DQB1-AS1 Gene

Function for HLA-DQB1-AS1 Gene

Phenotypes From GWAS Catalog for HLA-DQB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-DQB1-AS1 Gene

Localization for HLA-DQB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-DQB1-AS1 Gene

Pathways & Interactions for HLA-DQB1-AS1 Gene

SuperPathways for HLA-DQB1-AS1 Gene

No Data Available

Interacting Proteins for HLA-DQB1-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-DQB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-DQB1-AS1 Gene

Drugs & Compounds for HLA-DQB1-AS1 Gene

No Compound Related Data Available

Transcripts for HLA-DQB1-AS1 Gene

mRNA/cDNA for HLA-DQB1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-DQB1-AS1 Gene

No ASD Table

Relevant External Links for HLA-DQB1-AS1 Gene

GeneLoc Exon Structure for
HLA-DQB1-AS1
ECgene alternative splicing isoforms for
HLA-DQB1-AS1

Expression for HLA-DQB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-DQB1-AS1 Gene

genes like me logo Genes that share expression patterns with HLA-DQB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-DQB1-AS1 Gene

Orthologs for HLA-DQB1-AS1 Gene

Evolution for HLA-DQB1-AS1 Gene

ENSEMBL:
Gene Tree for HLA-DQB1-AS1 (if available)
TreeFam:
Gene Tree for HLA-DQB1-AS1 (if available)

No data available for Orthologs for HLA-DQB1-AS1 Gene

Paralogs for HLA-DQB1-AS1 Gene

No data available for Paralogs for HLA-DQB1-AS1 Gene

Variants for HLA-DQB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-DQB1-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000601647 -- 32,658,330(+) C/A upstream_transcript_variant
rs1001703871 -- 32,658,033(+) T/C upstream_transcript_variant
rs1005242971 -- 32,660,528(+) C/T non_coding_transcript_variant
rs1007676993 -- 32,658,949(+) C/T upstream_transcript_variant
rs1008038044 -- 32,658,621(+) G/A upstream_transcript_variant

Additional Variant Information for HLA-DQB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-DQB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-DQB1-AS1 Gene

Disorders for HLA-DQB1-AS1 Gene

Additional Disease Information for HLA-DQB1-AS1

No disorders were found for HLA-DQB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-DQB1-AS1 Gene

Publications for HLA-DQB1-AS1 Gene

No publications were found for HLA-DQB1-AS1 Gene.

Products for HLA-DQB1-AS1 Gene

Sources for HLA-DQB1-AS1 Gene

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