HLA-C belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from endoplasmic reticulum lumen. They are expressed in nearly all cells. The h... See more...

Aliases for HLA-C Gene

Aliases for HLA-C Gene

  • Major Histocompatibility Complex, Class I, C 2 3 5
  • HLA Class I Histocompatibility Antigen, C Alpha Chain 3 4
  • HLAC 3 4
  • Major Histocompatibility Antigen HLA-C 3
  • MHC Class I Antigen Heavy Chain HLA-C 3
  • Human Leukocyte Antigen-C Alpha Chain 3
  • Psoriasis Susceptibility 1 2
  • Human Leukocyte Antigen C 4
  • HLA-C Alpha Chain 3
  • HLA-C Antigen 3
  • HLA-JY3 3
  • D6S204 3
  • PSORS1 3
  • HLA-Cw 4
  • HLC-C 3
  • HLA-C 5
  • MHC 3

External Ids for HLA-C Gene

Previous HGNC Symbols for HLA-C Gene

  • HLA-JY3
  • D6S204
  • PSORS1

Previous GeneCards Identifiers for HLA-C Gene

  • GC06M031290
  • GC06M031007
  • GC06M031341
  • GC06M031344
  • GC06M031236

Summaries for HLA-C Gene

Entrez Gene Summary for HLA-C Gene

  • HLA-C belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from endoplasmic reticulum lumen. They are expressed in nearly all cells. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the alpha1 and alpha2 domain, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region, and exons 6 and 7 encode the cytoplasmic tail. Polymorphisms within exon 2 and exon 3 are responsible for the peptide binding specificity of each class one molecule. Typing for these polymorphisms is routinely done for bone marrow and kidney transplantation. Over one hundred HLA-C alleles have been described [provided by RefSeq, Jul 2008]

CIViC Summary for HLA-C Gene

GeneCards Summary for HLA-C Gene

HLA-C (Major Histocompatibility Complex, Class I, C) is a Protein Coding gene. Diseases associated with HLA-C include Psoriasis 1 and Human Immunodeficiency Virus Type 1. Among its related pathways are Antigen processing-Cross presentation and Actin Nucleation by ARP-WASP Complex. Gene Ontology (GO) annotations related to this gene include signaling receptor binding and TAP binding. An important paralog of this gene is HLA-B.

UniProtKB/Swiss-Prot Summary for HLA-C Gene

  • Antigen-presenting major histocompatibility complex class I (MHCI) molecule with an important role in reproduction and antiviral immunity (PubMed:20972337, PubMed:24091323, PubMed:20439706, PubMed:11172028, PubMed:20104487, PubMed:28649982, PubMed:29312307). In complex with B2M/beta 2 microglobulin displays a restricted repertoire of self and viral peptides and acts as a dominant ligand for inhibitory and activating killer immunoglobulin receptors (KIRs) expressed on NK cells (PubMed:16141329). In an allogeneic setting, such as during pregnancy, mediates interaction of extravillous trophoblasts with KIR on uterine NK cells and regulate trophoblast invasion necessary for placentation and overall fetal growth (PubMed:20972337, PubMed:24091323). During viral infection, may present viral peptides with low affinity for KIRs, impeding KIR-mediated inhibition through peptide antagonism and favoring lysis of infected cells (PubMed:20439706). Presents a restricted repertoire of viral peptides on antigen-presenting cells for recognition by alpha-beta T cell receptor (TCR) on HLA-C-restricted CD8-positive T cells, guiding antigen-specific T cell immune response to eliminate infected cells, particularly in chronic viral infection settings such as HIV-1 or CMV infection (PubMed:11172028, PubMed:20104487, PubMed:28649982). Both the peptide and the MHC molecule are recognized by TCR, the peptide is responsible for the fine specificity of antigen recognition and MHC residues account for the MHC restriction of T cells (By similarity). Typically presents intracellular peptide antigens of 9 amino acids that arise from cytosolic proteolysis via proteasome. Can bind different peptides containing allele-specific binding motifs, which are mainly defined by anchor residues at position 2 and 9. Preferentially displays peptides having a restricted repertoire of hydrophobic or aromatic amino acids (Phe, Ile, Leu, Met, Val and Tyr) at the C-terminal anchor (PubMed:8265661, PubMed:25311805).
  • ALLELE C*01:02: The peptide-bound form interacts with KIR2DL2 and KIR2DL3 inhibitory receptors on NK cells. The low affinity peptides compete with the high affinity peptides impeding KIR-mediated inhibition and favoring lysis of infected cells (PubMed:20439706). Presents to CD8-positive T cells a CMV epitope derived from UL83/pp65 (RCPEMISVL), an immediate-early antigen necessary for initiating viral replication (PubMed:12947002).
  • ALLELE C*04:01: Presents a conserved HIV-1 epitope derived from env (SFNCGGEFF) to memory CD8-positive T cells, eliciting very strong IFNG responses (PubMed:20104487). Presents CMV epitope derived from UL83/pp65 (QYDPVAALF) to CD8-positive T cells, triggering T cell cytotoxic response (PubMed:12947002).
  • ALLELE C*05:01: Presents HIV-1 epitope derived from rev (SAEPVPLQL) to CD8-positive T cells, triggering T cell cytotoxic response.
  • ALLELE C*06:02: In trophoblasts, interacts with KIR2DS2 on uterine NK cells and triggers NK cell activation, including secretion of cytokines such as GMCSF that enhances trophoblast migration.
  • ALLELE C*07:02: Plays an important role in the control of chronic CMV infection. Presents immunodominant CMV epitopes derived from IE1 (LSEFCRVL and CRVLCCYVL) and UL28 (FRCPRRFCF), both antigens synthesized during immediate-early period of viral replication. Elicits a strong anti-viral CD8-positive T cell immune response that increases markedly with age.
  • ALLELE C*08:01: Presents viral epitopes derived from CMV UL83 (VVCAHELVC) and IAV M1 (GILGFVFTL), triggering CD8-positive T cell cytotoxic response.
  • ALLELE C*12:02: Presents CMV epitope derived from UL83 (VAFTSHEHF) to CD8-positive T cells.
  • ALLELE C*15:02: Presents CMV epitope derived from UL83 CC (VVCAHELVC) to CD8-positive T cells, triggering T cell cytotoxic response.

Gene Wiki entry for HLA-C Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HLA-C Gene

Genomics for HLA-C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HLA-C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HLA-C on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for HLA-C

Top Transcription factor binding sites by QIAGEN in the HLA-C gene promoter:
  • AP-1
  • AP-2gamma
  • ARP-1
  • ATF-2
  • ATF6
  • c-Jun
  • CUTL1
  • POU2F1
  • USF-1
  • USF1

Genomic Locations for HLA-C Gene

Genomic Locations for HLA-C Gene
chr6:31,268,749-31,272,130
(GRCh38/hg38)
Size:
3,382 bases
Orientation:
Minus strand
chr6:31,236,526-31,239,907
(GRCh37/hg19)
Size:
3,382 bases
Orientation:
Minus strand

Genomic View for HLA-C Gene

Genes around HLA-C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-C Gene

  • Protein details for HLA-C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P10321-HLAC_HUMAN
    Recommended name:
    HLA class I histocompatibility antigen, C alpha chain
    Protein Accession:
    P10321
    Secondary Accessions:
    • O02863
    • O02864
    • O02865
    • O02866
    • O02958
    • O19505
    • O19652
    • O19676
    • O62879
    • O62882
    • O62883
    • O62888
    • O78060
    • O78061
    • O78062
    • O78063
    • O78067
    • O78068
    • O78069
    • O78072
    • O78083
    • O78090
    • O78091
    • O78149
    • O78165
    • O78166
    • O78178
    • O78202
    • O78203
    • O78211
    • O78214
    • P04222
    • P30499
    • P30500
    • P30501
    • P30502
    • P30503
    • P30504
    • P30505
    • P30506
    • P30507
    • P30508
    • P30509
    • P30510
    • P79498
    • Q07000
    • Q29631
    • Q29641
    • Q29643
    • Q29652
    • Q29743
    • Q29768
    • Q29862
    • Q29864
    • Q29865
    • Q29867
    • Q29921
    • Q29959
    • Q29960
    • Q29963
    • Q29986
    • Q29989
    • Q29990
    • Q29991
    • Q29992
    • Q29993
    • Q30192
    • Q31605
    • Q31627
    • Q860R1
    • Q860R2
    • Q95463
    • Q95603
    • Q95604
    • Q99528
    • Q9BD28
    • Q9GIK4
    • Q9GIK8
    • Q9GJ33
    • Q9MY30
    • Q9MY31
    • Q9MY35
    • Q9MY49
    • Q9MY74
    • Q9MYI3
    • Q9TNN7
    • Q9TNZ8
    • Q9TPS4
    • Q9TPV8
    • Q9TPX2
    • Q9TQB4
    • Q9TQJ5
    • Q9TQP9
    • Q9UM32
    • Q9UM33
    • Q9UM42
    • Q9UQS9

    Protein attributes for HLA-C Gene

    Size:
    366 amino acids
    Molecular mass:
    40649 Da
    Quaternary structure:
    • Heterotrimer that consists of an alpha chain HLA-C, a beta chain B2M and a peptide (peptide-HLA-C-B2M) (PubMed:28649982, PubMed:10850706, PubMed:24990997). Early in biogenesis, HLA-C-B2M dimer interacts with the components of the peptide-loading complex composed of TAPBP, TAP1-TAP2, TAPBPL, PDIA3/ERP57 and CALR (PubMed:18420581). Interacts with TAP1-TAP2 transporter via TAPBP; this interaction is obligatory for the loading of peptide epitopes delivered to the endoplasmic reticulum (ER) by TAP1-TAP2 transporter (By similarity). Being very selective in the peptide binding, forms a stable interaction with TAP1-TAP2, often leading to the accumulation of free heavy chains in the ER (PubMed:18420581). Only optimally assembled peptide-HLA-C-B2M trimer translocates to the surface of antigen-presenting cells, where it interacts with TCR and CD8 coreceptor on the surface of T cells. HLA-C (via polymorphic alpha-1 and alpha-2 domains) interacts with antigen-specific TCR (via CDR3 domains) (By similarity). One HLA-C molecule (mainly via nonpolymorphic alpha-3 domain) interacts with one CD8A homodimer (via CDR-like loop); this interaction insures peptide-HLA-C-B2M recognition by CD8-positive T cells only (By similarity). The peptide-HLA-C-B2M complex also interacts with KIRs. HLA-C type 1 (C1, with Asn104), including HLA-C*02, C*04, C*05, C*06 and C*15, interact with KIR2DL1 and KIR2DS1, and HLA-C type 2 (C2, with Lys104), including HLA-C*01, C*03, C*07 and C*08, interact with KIR2DL2 and KIR2DL3 (PubMed:20972337, PubMed:24091323, PubMed:16141329, PubMed:20439706, PubMed:11323700, PubMed:10850706).
    • (Microbial infection) Interacts with HTLV-1 p12I accessory protein.
    Miscellaneous:
    • [Isoform 2]: A transcript of allele C*16:01. This isoform lacks the transmembrane domain and is predicted to be a secreted protein.

    Three dimensional structures from OCA and Proteopedia for HLA-C Gene

    Alternative splice isoforms for HLA-C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HLA-C Gene

Post-translational modifications for HLA-C Gene

Other Protein References for HLA-C Gene

No data available for DME Specific Peptides for HLA-C Gene

Domains & Families for HLA-C Gene

Gene Families for HLA-C Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for HLA-C Gene

InterPro:
Blocks:
  • Immunoglobulin C-type
  • MHC class I signature
  • MHC_I, C-terminal
ProtoNet:

Suggested Antigen Peptide Sequences for HLA-C Gene

GenScript: Design optimal peptide antigens:
  • MHC class I antigen (F6IQH4_HUMAN)
  • MHC class I antigen (F6IQH5_HUMAN)
  • MHC class I antigen (F6IQH6_HUMAN)
  • MHC class I antigen (F6IQH7_HUMAN)
  • MHC class I antigen (F6IQH8_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P10321

UniProtKB/Swiss-Prot:

HLAC_HUMAN :
  • The alpha-1 domain is a structural part of the peptide-binding cleft.
Domain:
  • The alpha-1 domain is a structural part of the peptide-binding cleft.
  • The alpha-2 domain is a structural part of the peptide-binding cleft (PubMed:28649982, PubMed:10850706, PubMed:24990997). Mediates the interaction with TAP1-TAP2 complex.
  • The alpha-3 Ig-like domain mediates the interaction with CD8 coreceptor.
genes like me logo Genes that share domains with HLA-C: view

Function for HLA-C Gene

Molecular function for HLA-C Gene

UniProtKB/Swiss-Prot Function:
Antigen-presenting major histocompatibility complex class I (MHCI) molecule with an important role in reproduction and antiviral immunity (PubMed:20972337, PubMed:24091323, PubMed:20439706, PubMed:11172028, PubMed:20104487, PubMed:28649982, PubMed:29312307). In complex with B2M/beta 2 microglobulin displays a restricted repertoire of self and viral peptides and acts as a dominant ligand for inhibitory and activating killer immunoglobulin receptors (KIRs) expressed on NK cells (PubMed:16141329). In an allogeneic setting, such as during pregnancy, mediates interaction of extravillous trophoblasts with KIR on uterine NK cells and regulate trophoblast invasion necessary for placentation and overall fetal growth (PubMed:20972337, PubMed:24091323). During viral infection, may present viral peptides with low affinity for KIRs, impeding KIR-mediated inhibition through peptide antagonism and favoring lysis of infected cells (PubMed:20439706). Presents a restricted repertoire of viral peptides on antigen-presenting cells for recognition by alpha-beta T cell receptor (TCR) on HLA-C-restricted CD8-positive T cells, guiding antigen-specific T cell immune response to eliminate infected cells, particularly in chronic viral infection settings such as HIV-1 or CMV infection (PubMed:11172028, PubMed:20104487, PubMed:28649982). Both the peptide and the MHC molecule are recognized by TCR, the peptide is responsible for the fine specificity of antigen recognition and MHC residues account for the MHC restriction of T cells (By similarity). Typically presents intracellular peptide antigens of 9 amino acids that arise from cytosolic proteolysis via proteasome. Can bind different peptides containing allele-specific binding motifs, which are mainly defined by anchor residues at position 2 and 9. Preferentially displays peptides having a restricted repertoire of hydrophobic or aromatic amino acids (Phe, Ile, Leu, Met, Val and Tyr) at the C-terminal anchor (PubMed:8265661, PubMed:25311805).
UniProtKB/Swiss-Prot Function:
ALLELE C*01:02: The peptide-bound form interacts with KIR2DL2 and KIR2DL3 inhibitory receptors on NK cells. The low affinity peptides compete with the high affinity peptides impeding KIR-mediated inhibition and favoring lysis of infected cells (PubMed:20439706). Presents to CD8-positive T cells a CMV epitope derived from UL83/pp65 (RCPEMISVL), an immediate-early antigen necessary for initiating viral replication (PubMed:12947002).
UniProtKB/Swiss-Prot Function:
ALLELE C*04:01: Presents a conserved HIV-1 epitope derived from env (SFNCGGEFF) to memory CD8-positive T cells, eliciting very strong IFNG responses (PubMed:20104487). Presents CMV epitope derived from UL83/pp65 (QYDPVAALF) to CD8-positive T cells, triggering T cell cytotoxic response (PubMed:12947002).
UniProtKB/Swiss-Prot Function:
ALLELE C*05:01: Presents HIV-1 epitope derived from rev (SAEPVPLQL) to CD8-positive T cells, triggering T cell cytotoxic response.
UniProtKB/Swiss-Prot Function:
ALLELE C*06:02: In trophoblasts, interacts with KIR2DS2 on uterine NK cells and triggers NK cell activation, including secretion of cytokines such as GMCSF that enhances trophoblast migration.
UniProtKB/Swiss-Prot Function:
ALLELE C*07:02: Plays an important role in the control of chronic CMV infection. Presents immunodominant CMV epitopes derived from IE1 (LSEFCRVL and CRVLCCYVL) and UL28 (FRCPRRFCF), both antigens synthesized during immediate-early period of viral replication. Elicits a strong anti-viral CD8-positive T cell immune response that increases markedly with age.
UniProtKB/Swiss-Prot Function:
ALLELE C*08:01: Presents viral epitopes derived from CMV UL83 (VVCAHELVC) and IAV M1 (GILGFVFTL), triggering CD8-positive T cell cytotoxic response.
UniProtKB/Swiss-Prot Function:
ALLELE C*12:02: Presents CMV epitope derived from UL83 (VAFTSHEHF) to CD8-positive T cells.
UniProtKB/Swiss-Prot Function:
ALLELE C*15:02: Presents CMV epitope derived from UL83 CC (VVCAHELVC) to CD8-positive T cells, triggering T cell cytotoxic response.
GENATLAS Biochemistry:
HLA-C,alpha chain,44kDa,class Ia (see MHC1)

Phenotypes From GWAS Catalog for HLA-C Gene

Gene Ontology (GO) - Molecular Function for HLA-C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 18322206
GO:0042605 peptide antigen binding IDA 22031944
GO:0046977 TAP binding IDA 8617941
genes like me logo Genes that share ontologies with HLA-C: view
genes like me logo Genes that share phenotypes with HLA-C: view

Human Phenotype Ontology for HLA-C Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

miRNA for HLA-C Gene

miRTarBase miRNAs that target HLA-C

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HLA-C

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for HLA-C Gene

Localization for HLA-C Gene

Subcellular locations from UniProtKB/Swiss-Prot for HLA-C Gene

Cell membrane. Single-pass type I membrane protein. Endoplasmic reticulum membrane. Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HLA-C gene
Compartment Confidence
plasma membrane 5
extracellular 5
endoplasmic reticulum 5
golgi apparatus 5
endosome 4
cytoskeleton 2
mitochondrion 2
nucleus 2
cytosol 2
lysosome 2

Gene Ontology (GO) - Cellular Components for HLA-C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005783 endoplasmic reticulum IEA,IDA 20946353
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0005794 Golgi apparatus IDA 20946353
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with HLA-C: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for HLA-C Gene

Pathways & Interactions for HLA-C Gene

genes like me logo Genes that share pathways with HLA-C: view

Pathways by source for HLA-C Gene

2 GeneGo (Thomson Reuters) pathways for HLA-C Gene
  • Immune response Antigen presentation by MHC class I
  • Immune response Role of DAP12 receptors in NK cells
2 Qiagen pathways for HLA-C Gene
  • CDC42 Pathway
  • CTL Mediated Apoptosis

SIGNOR curated interactions for HLA-C Gene

Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for HLA-C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IEA --
GO:0002376 immune system process IEA --
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I TAS --
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS --
GO:0002480 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent TAS --
genes like me logo Genes that share ontologies with HLA-C: view

Drugs & Compounds for HLA-C Gene

(13) Drugs for HLA-C Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Allopurinol Approved Pharma 176
Carbamazepine Approved, Investigational Pharma Inhibitor of neuronal voltage-gated Na+ channels; anticonvulsant 104
Carboplatin Approved Pharma Antitumor agent that forms platinum-DNA adducts., Platinum 2588
Gemcitabine Approved Pharma Ribonucleotide reductase and DNA synthesis inhibitor, Nucleoside Analogs 2451
Methazolamide Approved Pharma Carbonic anhydrase inhibitor 8
genes like me logo Genes that share compounds with HLA-C: view

Transcripts for HLA-C Gene

mRNA/cDNA for HLA-C Gene

2 REFSEQ mRNAs :
105 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HLA-C

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-C Gene

No ASD Table

Relevant External Links for HLA-C Gene

GeneLoc Exon Structure for
HLA-C

Expression for HLA-C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-C Gene

mRNA differential expression in normal tissues according to GTEx for HLA-C Gene

This gene is overexpressed in Whole Blood (x15.8).

Protein differential expression in normal tissues from HIPED for HLA-C Gene

This gene is overexpressed in NK cells (14.9), Oral epithelium (11.9), and Amniocyte (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for HLA-C Gene



Protein tissue co-expression partners for HLA-C Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HLA-C

SOURCE GeneReport for Unigene cluster for HLA-C Gene:

Hs.656020

mRNA Expression by UniProt/SwissProt for HLA-C Gene:

P10321-HLAC_HUMAN
Tissue specificity: Ubiquitous. Highly expressed in fetal extravillous trophoblasts in the decidua basalis (at protein level).

Evidence on tissue expression from TISSUES for HLA-C Gene

  • Blood(5)
  • Liver(4.9)
  • Intestine(4.9)
  • Nervous system(4.9)
  • Lung(4.8)
  • Pancreas(4.6)
  • Spleen(4.6)
  • Skin(4.4)
  • Stomach(4.4)
  • Heart(3.8)
  • Eye(3.8)
  • Bone marrow(3.7)
  • Lymph node(3.6)
  • Kidney(3.5)
  • Muscle(3.3)
  • Bone(2.8)
  • Thyroid gland(2.8)
  • Adrenal gland(2.6)
  • Gall bladder(2.2)
genes like me logo Genes that share expression patterns with HLA-C: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-C Gene

Orthologs for HLA-C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HLA-C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia PATR-C 30 31
  • 95.99 (n)
OneToOne
Species where no ortholog for HLA-C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for HLA-C Gene

ENSEMBL:
Gene Tree for HLA-C (if available)
TreeFam:
Gene Tree for HLA-C (if available)
Aminode:
Evolutionary constrained regions (ECRs) for HLA-C: view image

Paralogs for HLA-C Gene

(214) SIMAP similar genes for HLA-C Gene using alignment to 4897 proteins:

  • 1C01_HUMAN
  • 1C02_HUMAN
  • 1C03_HUMAN
  • 1C04_HUMAN
  • 1C05_HUMAN
  • 1C06_HUMAN
  • 1C07_HUMAN
  • 1C08_HUMAN
  • 1C12_HUMAN
  • 1C14_HUMAN
  • 1C15_HUMAN
  • 1C16_HUMAN
  • 1C17_HUMAN
  • 1C18_HUMAN
  • A0AAB7_HUMAN
  • A1DZT7_HUMAN
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