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Aliases for HIST1H2BPS2 Gene

Subcategory (RNA class) for HIST1H2BPS2 Gene

lncRNA

Aliases for HIST1H2BPS2 Gene

  • Histone Cluster 1 H2B Pseudogene 2 2 3 5
  • H2B Histone Family, Member I, Pseudogene 2 3
  • Histone Cluster 1, H2b, Pseudogene 2 2 3
  • Histone 1, H2b, Pseudogene 2 2 3
  • PH2B.I 3
  • PH2B/I 3
  • H2BFIP 3

External Ids for HIST1H2BPS2 Gene

ORGUL Members for HIST1H2BPS2 Gene

Previous HGNC Symbols for HIST1H2BPS2 Gene

  • H2BFIP

Previous GeneCards Identifiers for HIST1H2BPS2 Gene

  • GC06M027939
  • GC06M027834
  • GC06M027643
  • GC06M027884
  • GC06M027996
  • GC06M028014
  • GC06M028044
  • GC06M028071
  • GC06M028095

Summaries for HIST1H2BPS2 Gene

Entrez Gene Summary for HIST1H2BPS2 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2BPS2 Gene

HIST1H2BPS2 (Histone Cluster 1 H2B Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HIST1H2BPS2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2BPS2 Gene

Genomics for HIST1H2BPS2 Gene

GeneHancer (GH) Regulatory Elements for HIST1H2BPS2 Gene

Promoters and enhancers for HIST1H2BPS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027834 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.9 +27.1 27108 6.4 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 SP3 NFYC MEF2D HIST1H2BN HIST1H2AK GC06M027849 ZKSCAN3 ZKSCAN4 ZKSCAN8 ZSCAN9 ZSCAN12 HNRNPA1P1 HIST1H2BPS2
GH06J027126 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 14.6 +726.4 726379 23 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC GC06P027243 HIST1H4I HIST1H2BJ ZKSCAN8 ABT1 HMGN4 BTN2A2 BTN2A3P BTN2A1 ZNF322
GH06J028141 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 -277.9 -277886 2.2 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 ZFP41 MEF2D ZKSCAN8 ZKSCAN4 ZNF603P ZKSCAN3 ZSCAN12 ZSCAN9 HNRNPA1P1 ZNF391 ZNF311 ZSCAN23
GH06J028586 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 14.6 -722.8 -722764 1.9 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 SP3 TRQ-TTG2-1 ZBED9 GPX6 GPX5 ZKSCAN3 ZNF311 ZNF603P ZSCAN12 ZNF90P2 KRT18P1
GH06J027751 Enhancer 1.3 Ensembl ENCODE 14.7 +111.1 111060 2.9 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TRV-AAC1-5 ZKSCAN3 ZKSCAN8 HNRNPA1P1 ZKSCAN4 ZNF603P ZSCAN12 HIST1H2BPS2 OR2B2 CD83P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIST1H2BPS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIST1H2BPS2 Gene

Genomic Locations for HIST1H2BPS2 Gene
chr6:27,864,062-27,864,401
(GRCh38/hg38)
Size:
340 bases
Orientation:
Minus strand
chr6:27,831,840-27,832,179
(GRCh37/hg19)
Size:
340 bases
Orientation:
Minus strand

Genomic View for HIST1H2BPS2 Gene

Genes around HIST1H2BPS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2BPS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2BPS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2BPS2 Gene

Proteins for HIST1H2BPS2 Gene

Post-translational modifications for HIST1H2BPS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2BPS2 Gene

Domains & Families for HIST1H2BPS2 Gene

Gene Families for HIST1H2BPS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2BPS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2BPS2 Gene

Function for HIST1H2BPS2 Gene

Phenotypes From GWAS Catalog for HIST1H2BPS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2BPS2 Gene

Localization for HIST1H2BPS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIST1H2BPS2 Gene

Pathways & Interactions for HIST1H2BPS2 Gene

SuperPathways for HIST1H2BPS2 Gene

No Data Available

Interacting Proteins for HIST1H2BPS2 Gene

Gene Ontology (GO) - Biological Process for HIST1H2BPS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2BPS2 Gene

Drugs & Compounds for HIST1H2BPS2 Gene

No Compound Related Data Available

Transcripts for HIST1H2BPS2 Gene

mRNA/cDNA for HIST1H2BPS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2BPS2 Gene

No ASD Table

Relevant External Links for HIST1H2BPS2 Gene

GeneLoc Exon Structure for
HIST1H2BPS2
ECgene alternative splicing isoforms for
HIST1H2BPS2

Expression for HIST1H2BPS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2BPS2 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2BPS2 Gene:

HIST1H2BPS2
genes like me logo Genes that share expression patterns with HIST1H2BPS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2BPS2 Gene

Orthologs for HIST1H2BPS2 Gene

Evolution for HIST1H2BPS2 Gene

ENSEMBL:
Gene Tree for HIST1H2BPS2 (if available)
TreeFam:
Gene Tree for HIST1H2BPS2 (if available)

No data available for Orthologs for HIST1H2BPS2 Gene

Paralogs for HIST1H2BPS2 Gene

No data available for Paralogs for HIST1H2BPS2 Gene

Variants for HIST1H2BPS2 Gene

Additional Variant Information for HIST1H2BPS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2BPS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2BPS2 Gene

Disorders for HIST1H2BPS2 Gene

No disorders were found for HIST1H2BPS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2BPS2 Gene

Publications for HIST1H2BPS2 Gene

  1. Characterization of the H1.5 gene completes the set of human H1 subtype genes. (PMID: 9031620) Albig W … Doenecke D (Gene 1997) 2 3 58

Products for HIST1H2BPS2 Gene

Sources for HIST1H2BPS2 Gene

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