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Aliases for HIST1H2APS4 Gene

Aliases for HIST1H2APS4 Gene

  • Histone Cluster 1 H2A Pseudogene 4 2 3 5
  • H2A Histone Family, Member K, Pseudogene 2 3
  • Histone Cluster 1, H2a, Pseudogene 4 2 3
  • Histone 1, H2a, Pseudogene 4 2 3
  • DJ34B20.2 3
  • PH2A/K 3
  • H2AFKP 3
  • H2A/K 3
  • H2AFK 3

External Ids for HIST1H2APS4 Gene

Previous HGNC Symbols for HIST1H2APS4 Gene

  • H2AFK
  • H2AFKP

Previous GeneCards Identifiers for HIST1H2APS4 Gene

  • GC06M026380
  • GC06M026274
  • GC06M026217
  • GC06M026277
  • GC06M026278
  • GC06M026279
  • GC06M026288
  • GC06M026302
  • GC06M026401
  • GC06M026427
  • GC06M026422
  • GC06M026464
  • GC06M026486
  • GC06M026505
  • GC06M026534
  • GC06M026546
  • GC06M026596

Summaries for HIST1H2APS4 Gene

Entrez Gene Summary for HIST1H2APS4 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS4 Gene

HIST1H2APS4 (Histone Cluster 1 H2A Pseudogene 4) is a Pseudogene.

Additional gene information for HIST1H2APS4 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS4 Gene

Genomics for HIST1H2APS4 Gene

GeneHancer (GH) Regulatory Elements for HIST1H2APS4 Gene

Promoters and enhancers for HIST1H2APS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I026268 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.8 774 6.5 HDGF FOXA2 SMAD1 ARID4B SIN3A ZNF48 YY1 ETS1 CBX5 ZNF207 GC06P027080 GC06M026656 HIST1H2APS4 HIST1H2BI HIST1H3G ABT1 BTN2A3P BTN2A1 HMGN4 GUSBP2
GH06I026193 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 10.7 +71.9 71909 14.6 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC HIST1H2AD HIST1H2BF HIST1H4E RPS10P1 HIST1H3D ENSG00000282988 ABT1 HMGN4 BTN2A3P BTN2A1
GH06I026232 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.6 +38.4 38350 4.1 PKNOX1 SMAD1 ARNT SIN3A ZNF2 IRF4 YY1 POLR2B ZNF766 ZNF207 GC06M026659 HIST1H1D HIST1H2APS3 PIR47167 PIR40027 PIR49597 PIR33202 PIR44693 PIR62527 ABT1
GH06I026239 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.8 +30.5 30526 5.3 SMAD1 RB1 SIN3A BMI1 BATF YY1 ETS1 CHAMP1 ELK1 ATF7 GC06P027074 HIST1H4F HIST1H3G HIST1H2APS4 HIST1H3E BTN2A1 ZNF322 HIST1H4G
GH06I026401 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 9.9 -129.6 -129558 2.3 HDGF FOXA2 ATF1 SMAD1 ARNT ARID4B DMAP1 ZNF48 YY1 SLC30A9 BTN3A1 BTN3A2 LINC00240 BTN2A1 BTN2A2 BTN1A1 HMGN4 HIST1H4H HIST1H2APS4 HIST1H3G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIST1H2APS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIST1H2APS4 Gene

Genomic Locations for HIST1H2APS4 Gene
chr6:26,272,021-26,272,701
(GRCh38/hg38)
Size:
681 bases
Orientation:
Minus strand
chr6:26,272,421-26,272,768
(GRCh37/hg19)

Genomic View for HIST1H2APS4 Gene

Genes around HIST1H2APS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS4 Gene

Proteins for HIST1H2APS4 Gene

Post-translational modifications for HIST1H2APS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS4 Gene

Domains & Families for HIST1H2APS4 Gene

Gene Families for HIST1H2APS4 Gene

Suggested Antigen Peptide Sequences for HIST1H2APS4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS4: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HIST1H2APS4 Gene

Function for HIST1H2APS4 Gene

Phenotypes From GWAS Catalog for HIST1H2APS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS4 Gene

Localization for HIST1H2APS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIST1H2APS4 Gene

Pathways & Interactions for HIST1H2APS4 Gene

SuperPathways for HIST1H2APS4 Gene

No Data Available

Interacting Proteins for HIST1H2APS4 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS4 Gene

Drugs & Compounds for HIST1H2APS4 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS4 Gene

mRNA/cDNA for HIST1H2APS4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS4 Gene

No ASD Table

Relevant External Links for HIST1H2APS4 Gene

GeneLoc Exon Structure for
HIST1H2APS4
ECgene alternative splicing isoforms for
HIST1H2APS4

Expression for HIST1H2APS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS4 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for HIST1H2APS4 Gene



NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS4 Gene:

HIST1H2APS4
genes like me logo Genes that share expression patterns with HIST1H2APS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS4 Gene

Orthologs for HIST1H2APS4 Gene

Evolution for HIST1H2APS4 Gene

ENSEMBL:
Gene Tree for HIST1H2APS4 (if available)
TreeFam:
Gene Tree for HIST1H2APS4 (if available)

No data available for Orthologs for HIST1H2APS4 Gene

Paralogs for HIST1H2APS4 Gene

genes like me logo Genes that share paralogs with HIST1H2APS4: view

No data available for Paralogs for HIST1H2APS4 Gene

Variants for HIST1H2APS4 Gene

Additional Variant Information for HIST1H2APS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2APS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS4 Gene

Disorders for HIST1H2APS4 Gene

Additional Disease Information for HIST1H2APS4

No disorders were found for HIST1H2APS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIST1H2APS4 Gene

Publications for HIST1H2APS4 Gene

  1. Human histone gene organization: nonregular arrangement within a large cluster. (PMID: 9119399) Albig W … Doenecke D (Genomics 1997) 2 3 58
  2. H2A/K pseudogene mutation may promote cell proliferation. (PMID: 26953487) Guo J … Yang JH (Mutation research 2016) 3 58

Products for HIST1H2APS4 Gene

Sources for HIST1H2APS4 Gene

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