Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HIST1H2APS3 Gene

Aliases for HIST1H2APS3 Gene

  • Histone Cluster 1 H2A Pseudogene 3 2 3 5
  • Histone Cluster 1, H2a, Pseudogene 3 2 3
  • Histone 1, H2a, Pseudogene 3 2 3
  • DJ34B20.8 3
  • H2AFUP 3

External Ids for HIST1H2APS3 Gene

Previous GeneCards Identifiers for HIST1H2APS3 Gene

  • GC00U914063
  • GC06U900690
  • GC06P026341
  • GC06P026234
  • GC06P026236
  • GC06P026237
  • GC06P026238
  • GC06P026239
  • GC06P026243
  • GC06P026252
  • GC06P026271
  • GC06P026317
  • GC06P026278
  • GC06P026362
  • GC06P026391
  • GC06P026435
  • GC06P026493
  • GC06P026795
  • GC06P026862

Summaries for HIST1H2APS3 Gene

Entrez Gene Summary for HIST1H2APS3 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS3 Gene

HIST1H2APS3 (Histone Cluster 1 H2A Pseudogene 3) is a Pseudogene.

Additional gene information for HIST1H2APS3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS3 Gene

Genomics for HIST1H2APS3 Gene

GeneHancer (GH) Regulatory Elements for HIST1H2APS3 Gene

Promoters and enhancers for HIST1H2APS3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I026232 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +1.2 1229 4.1 PKNOX1 SMAD1 ARNT SIN3A ZNF2 IRF4 YY1 POLR2B ZNF766 ZNF207 GC06M026659 HIST1H1D HIST1H2APS3 PIR47167 PIR40027 PIR49597 PIR33202 PIR44693 PIR62527 ABT1
GH06I026231 Enhancer 0.4 ENCODE 550.8 -1.8 -1848 0.3 PKNOX1 POLR2A ZNF395 HIST1H2APS3 HIST1H3E HIST1H2AE
GH06I026248 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.8 +22.2 22248 12.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A IRF4 YY1 HIST1H2BH HIST1H3F LOC105374986 ABT1 HMGN4 BTN2A1 BTN2A3P HIST1H3E BTN2A2 ZNF322
GH06I026193 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.8 -32.3 -32330 14.6 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ENSG00000282988 HIST1H2AD HIST1H2BF HIST1H3D HIST1H4E RPS10P1 ABT1 HMGN4 BTN2A3P BTN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIST1H2APS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIST1H2APS3 Gene

Genomic Locations for HIST1H2APS3 Gene
134 bases
Plus strand

Genomic View for HIST1H2APS3 Gene

Genes around HIST1H2APS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS3 Gene

Proteins for HIST1H2APS3 Gene

Post-translational modifications for HIST1H2APS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS3 Gene

Domains & Families for HIST1H2APS3 Gene

Gene Families for HIST1H2APS3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS3 Gene

Function for HIST1H2APS3 Gene

Phenotypes From GWAS Catalog for HIST1H2APS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS3 Gene

Localization for HIST1H2APS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIST1H2APS3 Gene

Pathways & Interactions for HIST1H2APS3 Gene

SuperPathways for HIST1H2APS3 Gene

No Data Available

Interacting Proteins for HIST1H2APS3 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS3 Gene


No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS3 Gene

Drugs & Compounds for HIST1H2APS3 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS3 Gene

mRNA/cDNA for HIST1H2APS3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS3 Gene

No ASD Table

Relevant External Links for HIST1H2APS3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HIST1H2APS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS3 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS3 Gene

This gene is overexpressed in Vagina (x7.3), Prostate (x5.3), Skin - Not Sun Exposed (Suprapubic) (x4.6), Cervix - Ectocervix (x4.4), and Whole Blood (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS3 Gene:

genes like me logo Genes that share expression patterns with HIST1H2APS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS3 Gene

Orthologs for HIST1H2APS3 Gene

Evolution for HIST1H2APS3 Gene

Gene Tree for HIST1H2APS3 (if available)
Gene Tree for HIST1H2APS3 (if available)

No data available for Orthologs for HIST1H2APS3 Gene

Paralogs for HIST1H2APS3 Gene

No data available for Paralogs for HIST1H2APS3 Gene

Variants for HIST1H2APS3 Gene

Additional Variant Information for HIST1H2APS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS3 Gene

Disorders for HIST1H2APS3 Gene

No disorders were found for HIST1H2APS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2APS3 Gene

Publications for HIST1H2APS3 Gene

  1. Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. (PMID: 19343178) Soranzo N … Deloukas P (PLoS genetics 2009) 3 58
  2. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson DF … Stefansson K (Nature genetics 2008) 3 58
  3. Identification of ten loci associated with height highlights new biological pathways in human growth. (PMID: 18391950) Lettre G … Hirschhorn JN (Nature genetics 2008) 3 58

Products for HIST1H2APS3 Gene

Sources for HIST1H2APS3 Gene

Loading form....