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Aliases for HIGD1AP16 Gene

Subcategory (RNA class) for HIGD1AP16 Gene

lncRNA

Aliases for HIGD1AP16 Gene

  • HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 16 2 3 5
  • HIG1 Hypoxia Inducible Domain Family, Member 1A Pseudogene 16 2

External Ids for HIGD1AP16 Gene

ORGUL Members for HIGD1AP16 Gene

Previous GeneCards Identifiers for HIGD1AP16 Gene

  • GC20P034467

Summaries for HIGD1AP16 Gene

GeneCards Summary for HIGD1AP16 Gene

HIGD1AP16 (HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HIGD1AP16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIGD1AP16 Gene

Genomics for HIGD1AP16 Gene

GeneHancer (GH) Regulatory Elements for HIGD1AP16 Gene

Promoters and enhancers for HIGD1AP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J035879 Enhancer 0.6 Ensembl dbSUPER 600.7 +1.8 1767 0.4 PRDM1 ZNF366 HIGD1AP16 RNU6-937P PHF20 RBM39 NFS1 ROMO1 CNBD2 CEP250 ENSG00000230155 GC20P035889
GH20J035877 Enhancer 0.6 Ensembl dbSUPER 600.7 -0.6 -633 0.4 PRDM10 EGR2 HIGD1AP16 RBM39 PHF20 RNU6-937P NFS1 ROMO1 ENSG00000230155 CEP250 ENSG00000199676 GC20M035854
GH20J035874 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.8 -2757 2.9 ZSCAN21 BACH1 MAFK SP7 SMARCA4 POLR2A PKNOX1 DPF2 ZNF600 PRDM10 CPNE1 NFS1 RBM39 PHF20 ROMO1 RNU6-937P CNBD2 MIR1289-1 CEP250 GDF5
GH20J035881 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5352 4.6 ZNF652 CC2D1A ELF3 CTCF ZNF121 CEBPG ZSCAN21 AHR ZNF24 SP7 CPNE1 RNU6-937P PHF20 RBM39 NFS1 ROMO1 CNBD2 CEP250 ENSG00000230155 GC20P035889
GH20J035870 Enhancer 0.8 ENCODE dbSUPER 0.4 -6.7 -6735 2.7 PRDM1 ZNF600 ZNF512 PKNOX1 MAX ZBTB17 NFIC ZNF335 ZNF366 ZNF146 CPNE1 RBM39 PHF20 NFS1 ROMO1 RNU6-937P CEP250 GDF5 MIR1289-1 CNBD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HIGD1AP16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIGD1AP16 Gene

Genomic Locations for HIGD1AP16 Gene
chr20:35,878,434-35,878,733
(GRCh38/hg38)
Size:
300 bases
Orientation:
Plus strand
chr20:34,466,398-34,466,655
(GRCh37/hg19)
Size:
258 bases
Orientation:
Plus strand

Genomic View for HIGD1AP16 Gene

Genes around HIGD1AP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIGD1AP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIGD1AP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIGD1AP16 Gene

Proteins for HIGD1AP16 Gene

Post-translational modifications for HIGD1AP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIGD1AP16 Gene

Domains & Families for HIGD1AP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIGD1AP16 Gene

Function for HIGD1AP16 Gene

Phenotypes From GWAS Catalog for HIGD1AP16 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIGD1AP16 Gene

Localization for HIGD1AP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIGD1AP16 Gene

Pathways & Interactions for HIGD1AP16 Gene

PathCards logo

SuperPathways for HIGD1AP16 Gene

No Data Available

Interacting Proteins for HIGD1AP16 Gene

Gene Ontology (GO) - Biological Process for HIGD1AP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIGD1AP16 Gene

Drugs & Compounds for HIGD1AP16 Gene

No Compound Related Data Available

Transcripts for HIGD1AP16 Gene

mRNA/cDNA for HIGD1AP16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIGD1AP16 Gene

No ASD Table

Relevant External Links for HIGD1AP16 Gene

GeneLoc Exon Structure for
HIGD1AP16
ECgene alternative splicing isoforms for
HIGD1AP16

Expression for HIGD1AP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIGD1AP16 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIGD1AP16 Gene:

HIGD1AP16
genes like me logo Genes that share expression patterns with HIGD1AP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIGD1AP16 Gene

Orthologs for HIGD1AP16 Gene

Evolution for HIGD1AP16 Gene

ENSEMBL:
Gene Tree for HIGD1AP16 (if available)
TreeFam:
Gene Tree for HIGD1AP16 (if available)

No data available for Orthologs for HIGD1AP16 Gene

Paralogs for HIGD1AP16 Gene

No data available for Paralogs for HIGD1AP16 Gene

Variants for HIGD1AP16 Gene

Additional Variant Information for HIGD1AP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIGD1AP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIGD1AP16 Gene

Disorders for HIGD1AP16 Gene

No disorders were found for HIGD1AP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIGD1AP16 Gene

Publications for HIGD1AP16 Gene

No publications were found for HIGD1AP16 Gene.

No data available for External Links for HIGD1AP16 Gene

Products for HIGD1AP16 Gene

Sources for HIGD1AP16 Gene

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