Aliases for HIF1A-AS3 Gene

Subcategory (RNA class) for HIF1A-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for HIF1A-AS3 Gene

  • HIF1A Antisense RNA 3 2 3 5
  • Lnc-TMEM30B-6 168
  • HSALNG0101780 167
  • NONHSAG015182 92
  • HSALNG0101778 167
  • NONHSAG015181 92
  • HIF1A-AS2 168
  • HIF1A-AS3 2

External Ids for HIF1A-AS3 Gene

Summaries for HIF1A-AS3 Gene

GeneCards Summary for HIF1A-AS3 Gene

HIF1A-AS3 (HIF1A Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HIF1A-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HIF1A-AS3 Gene

Genomics for HIF1A-AS3 Gene

GeneHancer (GH) Regulatory Elements for HIF1A-AS3 Gene

Promoters and enhancers for HIF1A-AS3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HIF1A-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIF1A-AS3 Gene

Genomic Locations for HIF1A-AS3 Gene
chr14:61,707,564-61,751,353
(GRCh38/hg38)
Size:
43,790 bases
Orientation:
Minus strand

Genomic View for HIF1A-AS3 Gene

Genes around HIF1A-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS3 Gene

Proteins for HIF1A-AS3 Gene

Post-translational modifications for HIF1A-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS3 Gene

Domains & Families for HIF1A-AS3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HIF1A-AS3 Gene

Function for HIF1A-AS3 Gene

Phenotypes From GWAS Catalog for HIF1A-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS3 Gene

Localization for HIF1A-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIF1A-AS3 Gene

Pathways & Interactions for HIF1A-AS3 Gene

PathCards logo

SuperPathways for HIF1A-AS3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HIF1A-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HIF1A-AS3 Gene

Drugs & Compounds for HIF1A-AS3 Gene

No Compound Related Data Available

Transcripts for HIF1A-AS3 Gene

mRNA/cDNA for HIF1A-AS3 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS3 Gene

No ASD Table

Relevant External Links for HIF1A-AS3 Gene

GeneLoc Exon Structure for
HIF1A-AS3

Expression for HIF1A-AS3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIF1A-AS3 Gene

Orthologs for HIF1A-AS3 Gene

Evolution for HIF1A-AS3 Gene

ENSEMBL:
Gene Tree for HIF1A-AS3 (if available)
TreeFam:
Gene Tree for HIF1A-AS3 (if available)

No data available for Orthologs for HIF1A-AS3 Gene

Paralogs for HIF1A-AS3 Gene

No data available for Paralogs for HIF1A-AS3 Gene

Variants for HIF1A-AS3 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HIF1A-AS3 Gene

SNP ID Clinical significance and condition Chr 14 pos Variation AA Info Type
709474 Benign: not provided 61,746,956(-) G/A SYNONYMOUS_VARIANT,THREE_PRIME_UTR_VARIANT
716592 Benign: not provided 61,736,905(-) G/A MISSENSE_VARIANT
716776 Benign: not provided 61,740,835(-) G/A SYNONYMOUS_VARIANT
722908 Likely Benign: not provided 61,738,343(-) C/T SYNONYMOUS_VARIANT
723203 Benign: not provided 61,737,102(-) C/G SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for HIF1A-AS3 Gene

Additional Variant Information for HIF1A-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIF1A-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIF1A-AS3 Gene

Disorders for HIF1A-AS3 Gene

No disorders were found for HIF1A-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIF1A-AS3 Gene

Publications for HIF1A-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for HIF1A-AS3 Gene

Products for HIF1A-AS3 Gene

Sources for HIF1A-AS3 Gene