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Aliases for HIF1A-AS1 Gene

Subcategory (RNA class) for HIF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HIF1A-AS1 Gene

  • HIF1A Antisense RNA 1 2 3 5
  • HIF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • 5aHIF1alpha 3
  • 5aHIF-1A 3

External Ids for HIF1A-AS1 Gene

Previous GeneCards Identifiers for HIF1A-AS1 Gene

  • GC14U901317
  • GC14M062148

Summaries for HIF1A-AS1 Gene

GeneCards Summary for HIF1A-AS1 Gene

HIF1A-AS1 (HIF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HIF1A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIF1A-AS1 Gene

Genomics for HIF1A-AS1 Gene

GeneHancer (GH) Regulatory Elements for HIF1A-AS1 Gene

Promoters and enhancers for HIF1A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I061468 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.2 +218.2 218180 17.7 PKNOX1 CLOCK FOXA2 NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF143 HIF1A LINC01303 FLJ22447 SNAPC1 HIF1A-AS1 PRKCH GC14M061347 ENSG00000247287
GH14I060861 Enhancer 0.9 Ensembl ENCODE 4.4 +833.0 833004 2.4 NCOA3 ESRRA CLOCK NFIB NEUROD1 MZF1 FEZF1 CEBPG CTBP1 GATA3 RTN1 HIF1A-AS1 ENSG00000258892 MAD2L1P1 MNAT1
GH14I061694 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 -2.1 -2089 7.1 HDGF PKNOX1 CLOCK SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 HIF1A SNAPC1 FLJ22447 HIF1A-AS1 GC14P061694 GC14P061696 GC14P061728
GH14I060777 Enhancer 0.4 ENCODE 4.4 +917.6 917629 1.8 JUND FOS MAD2L1P1 SIX4 HIF1A-AS1 MNAT1
GH14I061690 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.8 +4.5 4463 0.8 TAL1 EBF1 FEZF1 BATF GATA2 PRDM10 IKZF2 RUNX3 SMARCE1 CBFB HIF1A HIF1A-AS1 GC14P061694 GC14P061590
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIF1A-AS1 Gene

Genomic Locations for HIF1A-AS1 Gene
chr14:61,681,041-61,695,823
(GRCh38/hg38)
Size:
14,783 bases
Orientation:
Minus strand
chr14:62,147,759-62,162,541
(GRCh37/hg19)

Genomic View for HIF1A-AS1 Gene

Genes around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS1 Gene

Proteins for HIF1A-AS1 Gene

Post-translational modifications for HIF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS1 Gene

Domains & Families for HIF1A-AS1 Gene

Gene Families for HIF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIF1A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIF1A-AS1 Gene

Function for HIF1A-AS1 Gene

Phenotypes From GWAS Catalog for HIF1A-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS1 Gene

Localization for HIF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIF1A-AS1 Gene

Pathways & Interactions for HIF1A-AS1 Gene

SuperPathways for HIF1A-AS1 Gene

No Data Available

Interacting Proteins for HIF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HIF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIF1A-AS1 Gene

Drugs & Compounds for HIF1A-AS1 Gene

No Compound Related Data Available

Transcripts for HIF1A-AS1 Gene

mRNA/cDNA for HIF1A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS1 Gene

No ASD Table

Relevant External Links for HIF1A-AS1 Gene

GeneLoc Exon Structure for
HIF1A-AS1
ECgene alternative splicing isoforms for
HIF1A-AS1

Expression for HIF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIF1A-AS1 Gene

genes like me logo Genes that share expression patterns with HIF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIF1A-AS1 Gene

Orthologs for HIF1A-AS1 Gene

Evolution for HIF1A-AS1 Gene

ENSEMBL:
Gene Tree for HIF1A-AS1 (if available)
TreeFam:
Gene Tree for HIF1A-AS1 (if available)

No data available for Orthologs for HIF1A-AS1 Gene

Paralogs for HIF1A-AS1 Gene

No data available for Paralogs for HIF1A-AS1 Gene

Variants for HIF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HIF1A-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000126254 -- 61,695,702(-) C/T intron_variant
rs1000464543 -- 61,694,626(-) C/T intron_variant
rs1000493978 -- 61,695,031(-) G/A intron_variant
rs1000546294 -- 61,689,595(-) T/C intron_variant
rs1001342228 -- 61,684,142(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HIF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3721n54 CNV loss 21841781
nsv564884 CNV loss 21841781

Additional Variant Information for HIF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HIF1A-AS1 Gene

Disorders for HIF1A-AS1 Gene

Additional Disease Information for HIF1A-AS1

No disorders were found for HIF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIF1A-AS1 Gene

Publications for HIF1A-AS1 Gene

  1. BRG1 expression is increased in thoracic aortic aneurysms and regulates proliferation and apoptosis of vascular smooth muscle cells through the long non-coding RNA HIF1A-AS1 in vitro. (PMID: 24875884) Wang S … Xu Z (European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery 2015) 2 3 58
  2. Characterization of novel antisense HIF-1α transcripts in human cancers. (PMID: 21897117) Bertozzi D … Capranico G (Cell cycle (Georgetown, Tex.) 2011) 2 3 58
  3. DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus. (PMID: 19854946) Baranello L … Capranico G (Nucleic acids research 2010) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for HIF1A-AS1 Gene

Sources for HIF1A-AS1 Gene

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