Aliases for HHLA3-AS1 Gene

Subcategory (RNA class) for HHLA3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for HHLA3-AS1 Gene

  • HHLA3 Antisense RNA 1 2 3
  • Lnc-ANKRD13C-1 168
  • HSALNG0004374 167
  • NONHSAG001796 92
  • HHLA3-AS1 2

External Ids for HHLA3-AS1 Gene

Summaries for HHLA3-AS1 Gene

GeneCards Summary for HHLA3-AS1 Gene

HHLA3-AS1 (HHLA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HHLA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HHLA3-AS1 Gene

Genomics for HHLA3-AS1 Gene

GeneHancer (GH) Regulatory Elements for HHLA3-AS1 Gene

Promoters and enhancers for HHLA3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J070358 Enhancer 0.9 Ensembl ENCODE 500.7 +1.6 1574 1.1 EP300 MEF2C TRIM22 CBFB ARNT MEF2B NBN BATF ELF1 IKZF1 ENSG00000226088 HHLA3-AS1 HHLA3
GH01J070360 Promoter 0.9 EPDnew 500.7 +0.6 550 0.1 MYC SP2 MAX PBX2 MNT RCOR1 IRF1 HDAC2 FOXM1 TFDP1 ENSG00000226088 HHLA3-AS1 ANKRD13C HHLA3
GH01J070361 Enhancer 0.5 Ensembl 500.7 -1.2 -1194 0.8 EP300 ATF2 MAFF MAFK GATA2 ZNF629 PRDM1 ENSG00000226088 HHLA3-AS1 HHLA3 lnc-ANKRD13C-4
GH01J070352 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +7.0 7006 4.8 ZBTB40 ZNF217 EP300 SIN3A NRF1 TCF12 POLR2G GTF2E2 PHF8 TEAD4 HHLA3 ANKRD13C SRSF11 ZRANB2 MIR186 LRRC40 HHLA3-AS1 lnc-LRRC40-5
GH01J070373 Enhancer 0.7 Ensembl ENCODE 0.4 -12.8 -12794 1.2 TEAD4 KLF7 WT1 ZNF316 GLIS1 KLF1 MAZ POU5F1 PRDM10 IKZF1 HHLA3-AS1 HHLA3 lnc-ANKRD13C-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HHLA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HHLA3-AS1 Gene

Genomic Locations for HHLA3-AS1 Gene
chr1:70,355,885-70,361,007
(GRCh38/hg38)
Size:
5,123 bases
Orientation:
Minus strand

Genomic View for HHLA3-AS1 Gene

Genes around HHLA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HHLA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHLA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HHLA3-AS1 Gene

Proteins for HHLA3-AS1 Gene

Post-translational modifications for HHLA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HHLA3-AS1 Gene

Domains & Families for HHLA3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HHLA3-AS1 Gene

Function for HHLA3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HHLA3-AS1 Gene

Localization for HHLA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HHLA3-AS1 Gene

Pathways & Interactions for HHLA3-AS1 Gene

PathCards logo

SuperPathways for HHLA3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HHLA3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HHLA3-AS1 Gene

Drugs & Compounds for HHLA3-AS1 Gene

No Compound Related Data Available

Transcripts for HHLA3-AS1 Gene

mRNA/cDNA for HHLA3-AS1 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HHLA3-AS1 Gene

No ASD Table

Relevant External Links for HHLA3-AS1 Gene

GeneLoc Exon Structure for
HHLA3-AS1

Expression for HHLA3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HHLA3-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HHLA3-AS1 Gene

Orthologs for HHLA3-AS1 Gene

No data available for Orthologs and Evolution for HHLA3-AS1 Gene

Paralogs for HHLA3-AS1 Gene

No data available for Paralogs for HHLA3-AS1 Gene

Variants for HHLA3-AS1 Gene

Additional dbSNP identifiers (rs#s) for HHLA3-AS1 Gene

Additional Variant Information for HHLA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HHLA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HHLA3-AS1 Gene

Disorders for HHLA3-AS1 Gene

No disorders were found for HHLA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HHLA3-AS1 Gene

Publications for HHLA3-AS1 Gene

No publications were found for HHLA3-AS1 Gene.

No data available for Mastermind for HHLA3-AS1 Gene

Products for HHLA3-AS1 Gene

Sources for HHLA3-AS1 Gene