Aliases for HHLA3-AS1 Gene

Subcategory (RNA class) for HHLA3-AS1 Gene


Number of RNA Genes sources:

3 / 17

Aliases for HHLA3-AS1 Gene

  • HHLA3 Antisense RNA 1 2 3 5
  • HHLA3-AS1 2 5
  • NONHSAG001796.2 91
  • Lnc-ANKRD13C-1 165
  • HSALNG0004374 164

External Ids for HHLA3-AS1 Gene

Summaries for HHLA3-AS1 Gene

GeneCards Summary for HHLA3-AS1 Gene

HHLA3-AS1 (HHLA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HHLA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HHLA3-AS1 Gene

Genomics for HHLA3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HHLA3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J070358 Enhancer 0.9 Ensembl ENCODE 600.7 +1.6 1587 1.1 BACH1 TCF12 IKZF2 TRIM22 EED ARID3A RELB RUNX3 GATAD2B CBFB HHLA3-AS1 ANKRD13C HHLA3 CTH
GH01J070360 Promoter 0.8 EPDnew 600.7 +0.6 563 0.1 IKZF1 ZNF692 PKNOX1 HDAC1 EP300 MGA SP2 HDAC2 MNT MYC HHLA3-AS1 ANKRD13C HHLA3 CTH
GH01J070361 Enhancer 0.5 Ensembl 600.7 -1.2 -1181 0.8 ZNF629 PRDM1 MAFF MAFK ATF2 HHLA3-AS1 HHLA3 ANKRD13C CTH lnc-ANKRD13C-4
GH01J070382 Enhancer 0.5 Ensembl 12 -21.8 -21781 0.4 IKZF2 DPF2 RELB IKZF1 SPI1 ZNF664 HHLA3-AS1 ANKRD13C HHLA3 CTH lnc-ANKRD13C-4
GH01J070486 Enhancer 0.8 Ensembl ENCODE 4.8 -126.5 -126477 1.8 CTCF PRDM10 ZNF143 REST RAD21 TRIM22 YY1 MNT JUND SMC3 HHLA3-AS1 lnc-ANKRD13C-3 lnc-CTH-11 CTH PTGER3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HHLA3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HHLA3-AS1 Gene

Genomic Locations for HHLA3-AS1 Gene
5,139 bases
Minus strand

Genomic View for HHLA3-AS1 Gene

Genes around HHLA3-AS1 on UCSC Golden Path with GeneCards custom track
HHLA3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HHLA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHLA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HHLA3-AS1 Gene

Proteins for HHLA3-AS1 Gene

Post-translational modifications for HHLA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HHLA3-AS1 Gene

Domains & Families for HHLA3-AS1 Gene

Gene Families for HHLA3-AS1 Gene

genes like me logo Genes that share domains with HHLA3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HHLA3-AS1 Gene

Function for HHLA3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HHLA3-AS1 Gene

Localization for HHLA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HHLA3-AS1 Gene

Pathways & Interactions for HHLA3-AS1 Gene

PathCards logo

SuperPathways for HHLA3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HHLA3-AS1 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HHLA3-AS1 Gene

Drugs & Compounds for HHLA3-AS1 Gene

No Compound Related Data Available

Transcripts for HHLA3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HHLA3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000045B608_9606 lncRNA 575 5

HGNC: 40277,

Ensembl: ENST00000413943 (view in UCSC) ,

LncBook: HSALNT0008684,

LNCipedia: lnc-ANKRD13C-1:1,


URS00009C4FD2_9606 lncRNA 827 1


HHLA3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HHLA3-AS1 Gene

No ASD Table

Relevant External Links for HHLA3-AS1 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for HHLA3-AS1 Gene

Expression for HHLA3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HHLA3-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HHLA3-AS1 Gene

Orthologs for HHLA3-AS1 Gene

Evolution for HHLA3-AS1 Gene

Gene Tree for HHLA3-AS1 (if available)
Gene Tree for HHLA3-AS1 (if available)

No data available for Orthologs for HHLA3-AS1 Gene

Paralogs for HHLA3-AS1 Gene

No data available for Paralogs for HHLA3-AS1 Gene

Variants for HHLA3-AS1 Gene

Additional dbSNP identifiers (rs#s) for HHLA3-AS1 Gene

Additional Variant Information for HHLA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HHLA3-AS1 Gene

Disorders for HHLA3-AS1 Gene

No disorders were found for HHLA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HHLA3-AS1 Gene

Publications for HHLA3-AS1 Gene

No publications were found for HHLA3-AS1 Gene.

No data available for Mastermind for HHLA3-AS1 Gene

Products for HHLA3-AS1 Gene

Sources for HHLA3-AS1 Gene