Aliases for HFE Gene
Aliases for HFE Gene
External Ids for HFE Gene
- HGNC: 4886
- Entrez Gene: 3077
- Ensembl: ENSG00000010704
- OMIM: 613609
- UniProtKB: Q30201
Previous GeneCards Identifiers for HFE Gene
- GC06P026130
- GC06P026195
- GC06P026030
Summaries for HFE Gene
-
The protein encoded by this gene is a membrane protein that is similar to MHC class I-type proteins and associates with beta2-microglobulin (beta2M). It is thought that this protein functions to regulate iron absorption by regulating the interaction of the transferrin receptor with transferrin. The iron storage disorder, hereditary haemochromatosis, is a recessive genetic disorder that results from defects in this gene. At least nine alternatively spliced variants have been described for this gene. Additional variants have been found but their full-length nature has not been determined. [provided by RefSeq, Jul 2008]
GeneCards Summary for HFE Gene
HFE (Homeostatic Iron Regulator) is a Protein Coding gene. Diseases associated with HFE include Hemochromatosis, Type 1 and Microvascular Complications Of Diabetes 7. Among its related pathways are Hfe effect on hepcidin production. Gene Ontology (GO) annotations related to this gene include signaling receptor binding and peptide antigen binding. An important paralog of this gene is MR1.
UniProtKB/Swiss-Prot for HFE Gene
-
Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
Additional gene information for HFE Gene
- Monarch Initiative
- Search for HFE at DataMed
- Search for HFE at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HFE Gene
Genomics for HFE Gene
GeneHancer (GH) Regulatory Elements for HFE Gene
Promoters and enhancers for HFE Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around HFE on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the HFE gene promoter:
-
- C/EBPalpha
Regulatory Element Products
Genomic Locations for HFE Gene
Genomic Locations for HFE Gene
- chr6:26,087,281-26,098,343
- (GRCh38/hg38)
- Size:
- 11,063 bases
- Orientation:
- Plus strand
- chr6:26,087,509-26,098,571
- (GRCh37/hg19)
- Size:
- 11,063 bases
- Orientation:
- Plus strand
Genomic View for HFE Gene
Genes around HFE on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.2 by Entrez Gene
- 6p22.2 by HGNC
- 6p22.2 by Ensembl
HFE Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HFE Gene
Proteins for HFE Gene
-
Protein details for HFE Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q30201-HFE_HUMAN
- Recommended name:
- Hereditary hemochromatosis protein
- Protein Accession:
- Q30201
- B2CKL0
- O75929
- O75930
- O75931
- Q17RT0
- Q96KU5
- Q96KU6
- Q96KU7
- Q96KU8
- Q9HC64
- Q9HC68
- Q9HC70
- Q9HC83
Protein attributes for HFE Gene
- Size:
- 348 amino acids
- Molecular mass:
- 40108 Da
- Quaternary structure:
-
- Binds TFR through the extracellular domain in a pH-dependent manner.
Protein Expression for HFE Gene
Post-translational modifications for HFE Gene
Other Protein References for HFE Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for HFE
- Novus Biologicals Antibodies for HFE
-
Abcam antibodies for HFE
- Invitrogen Antibodies for HFE
- GeneTex HFE Antibody for HFE
-
Santa Cruz Biotechnology (SCBT) Antibodies for HFE
- Sino Biological Antibodies for HFE
Protein Products
- Search Origene for MassSpec and Protein Over-expression Lysates for HFE
- Origene Custom Protein Services for HFE
- ProSpec Recombinant Proteins for HFE
- Search GeneTex for Proteins for HFE
-
Abcam proteins for HFE
Assay Products
- antibodies-online: Search results for 1 available HFE Elisa Kits ranked by validation data
- Compare Top HFE Elisa Kits
-
Recommended
No data available for DME Specific Peptides for HFE Gene
Domains & Families for HFE Gene
Gene Families for HFE Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Predicted membrane proteins
Protein Domains for HFE Gene
Suggested Antigen Peptide Sequences for HFE Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q30201- Family:
-
- Belongs to the MHC class I family.
Function for HFE Gene
Molecular function for HFE Gene
- UniProtKB/Swiss-Prot Function:
- Binds to transferrin receptor (TFR) and reduces its affinity for iron-loaded transferrin.
- GENATLAS Biochemistry:
- HFE protein,defective in HH normally expressed in cryptal enterocytes of the duodenum and in placenta,complexing with beta 2 microglobulin and transferrin receptor (TFR2),negative modulator of the uptake of transferrin-bound iron from plasma
Phenotypes From GWAS Catalog for HFE Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005102 | signaling receptor binding | IPI | 10638746 |
| GO:0005515 | protein binding | IPI | 15880641 |
| GO:0030881 | beta-2-microglobulin binding | IPI | 9465039 |
| GO:0039706 | co-receptor binding | IPI | 22728873 |
| GO:0042605 | NOT peptide antigen binding | IKR | 8696333 |
Phenotypes for HFE Gene
- MGI mutant phenotypes for HFE:
-
inferred from 11 alleles
- limbs/digits/tail phenotype
- digestive/alimentary phenotype
- homeostasis/metabolism phenotype
- nervous system phenotype
- behavior/neurological phenotype
- no phenotypic analysis
- mortality/aging
- cellular phenotype
- liver/biliary system phenotype
- normal phenotype
- hematopoietic system phenotype
- immune system phenotype
- growth/size/body region phenotype
- GenomeRNAi human phenotypes for HFE:
Animal Models for HFE Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for HFE
-
CRISPR Products
-
OriGene CRISPR knockouts for HFE
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HFE
- genomics-online: gRNA clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- Applied Biological Materials CRISPR for HFE
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for HFE
- GenScript: Design CRISPR guide RNA sequences for HFE
miRNA for HFE Gene
- miRTarBase miRNAs that target HFE
-
- hsa-mir-200b-3p (MIRT054541)
- hsa-mir-200a-3p (MIRT054542)
- hsa-mir-200c-3p (MIRT054543)
- hsa-mir-6848-3p (MIRT676954)
- hsa-mir-6843-3p (MIRT676955)
- hsa-mir-6878-3p (MIRT676956)
- hsa-mir-640 (MIRT676957)
- hsa-mir-378a-5p (MIRT676958)
- hsa-mir-6821-3p (MIRT676959)
- hsa-mir-1193 (MIRT676960)
- hsa-mir-6790-3p (MIRT676961)
- hsa-mir-3653-5p (MIRT676962)
- hsa-mir-1976 (MIRT676963)
- hsa-mir-2392 (MIRT676964)
- hsa-mir-4789-5p (MIRT693479)
- hsa-mir-95-5p (MIRT693480)
- hsa-mir-4801 (MIRT693481)
- hsa-mir-4731-3p (MIRT693482)
- hsa-mir-4511 (MIRT693483)
- hsa-mir-101-3p (MIRT761072)
- hsa-mir-4537 (MIRT770160)
- hsa-mir-5694 (MIRT775071)
- hsa-mir-582-5p (MIRT775323)
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for HFE
- Browse OriGene Inhibitory RNA Products For HFE
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HFE
- genomics-online: shRNA clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
Clone Products
-
OriGene ORF clones in human for HFE
- RC217447L1V
- RC217447L2V
- RC219194L1V
- RC219194L2V
- RC217509L1V
- RC217509L2V
- RC219316L1V
- RC219316L2V
- RC217560L1V
- RC217560L2V
- RC220765L1V
- RC220765L2V
- RC219465L1V
- RC219465L2V
- RC217624L1V
- RC217624L2V
- RC220860L1V
- RC220860L2V
- RC217447
- RC217447L1
- RC217447L2
- RG217447
- RC237553
- RC219194
- RC219194L1
- RC219194L2
- RG219194
- RC217509
- RC217509L1
- RC217509L2
- RG217509
- RC219316
- RC219316L1
- RC219316L2
- RG219316
- RC217560
- RC217560L1
- RC217560L2
- RG217560
- RC220765
- RC220765L1
- RC220765L2
- RG220765
- RC219465
- RC219465L1
- RC219465L2
- RG219465
- RC217624
- RC217624L1
- RC217624L2
- RG217624
- RC220860
- RC220860L1
- RC220860L2
- RG220860
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HFE
- VectorBuilder custom plasmid, inducible vectors for HFE
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HFE
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for HFE
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HFE
- genomics-online: cdna clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- orf clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- Applied Biological Materials Clones for HFE
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for HFE
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for HFE Gene
Localization for HFE Gene
Subcellular locations from UniProtKB/Swiss-Prot for HFE Gene
- Cell membrane; Single-pass type I membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 5 |
| endosome | 5 |
| mitochondrion | 3 |
| cytoskeleton | 2 |
| nucleus | 2 |
| endoplasmic reticulum | 2 |
| cytosol | 2 |
| lysosome | 2 |
| peroxisome | 1 |
| golgi apparatus | 1 |
- Mitochondria (2)
- Nuclear membrane (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005615 | extracellular space | IDA | 21173098 |
| GO:0005769 | early endosome | IDA | 15880641 |
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0005887 | integral component of plasma membrane | TAS | 10638746 |
| GO:0009897 | external side of plasma membrane | IDA | 24904118 |
Pathways & Interactions for HFE Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Hfe effect on hepcidin production | ||
Pathways by source for HFE Gene
1 BioSystems pathway for HFE Gene
Interacting Proteins for HFE Gene
Selected Interacting proteins:
Q30201-HFE_HUMAN
ENSP00000417404
for HFE Gene via
MINT
STRING
IID
UniProtKB
GPS-Prot Interaction Network for HFE
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002474 | NOT antigen processing and presentation of peptide antigen via MHC class I | IKR | 8696333 |
| GO:0002626 | negative regulation of T cell antigen processing and presentation | IEA | -- |
| GO:0002725 | negative regulation of T cell cytokine production | IGI | 24643698 |
| GO:0006811 | ion transport | IEA | -- |
| GO:0006879 | cellular iron ion homeostasis | IEA | -- |
No data available for SIGNOR curated interactions for HFE Gene
Transcripts for HFE Gene
mRNA/cDNA for HFE Gene
- (13) REFSEQ mRNAs :
- (25) Additional mRNA sequences :
- (69) Selected AceView cDNA sequences:
- (14) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000397022 1280 bps (uc003nfy.2)
- ENST00000353147 809 bps (uc003nge.2)
- ENST00000352392 653 bps (uc003ngf.2)
- ENST00000349999 1704 bps (uc003nfz.2)
- ENST00000317896 1922 bps (uc003ngc.2)
CRISPR Products
-
OriGene CRISPR knockouts for HFE
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HFE
- genomics-online: gRNA clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- Applied Biological Materials CRISPR for HFE
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for HFE
- GenScript: Design CRISPR guide RNA sequences for HFE
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for HFE
- Browse OriGene Inhibitory RNA Products For HFE
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HFE
- genomics-online: shRNA clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
Clone Products
-
OriGene ORF clones in human for HFE
- RC217447L1V
- RC217447L2V
- RC219194L1V
- RC219194L2V
- RC217509L1V
- RC217509L2V
- RC219316L1V
- RC219316L2V
- RC217560L1V
- RC217560L2V
- RC220765L1V
- RC220765L2V
- RC219465L1V
- RC219465L2V
- RC217624L1V
- RC217624L2V
- RC220860L1V
- RC220860L2V
- RC217447
- RC217447L1
- RC217447L2
- RG217447
- RC237553
- RC219194
- RC219194L1
- RC219194L2
- RG219194
- RC217509
- RC217509L1
- RC217509L2
- RG217509
- RC219316
- RC219316L1
- RC219316L2
- RG219316
- RC217560
- RC217560L1
- RC217560L2
- RG217560
- RC220765
- RC220765L1
- RC220765L2
- RG220765
- RC219465
- RC219465L1
- RC219465L2
- RG219465
- RC217624
- RC217624L1
- RC217624L2
- RG217624
- RC220860
- RC220860L1
- RC220860L2
- RG220860
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HFE
- VectorBuilder custom plasmid, inducible vectors for HFE
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HFE
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Addgene plasmids for HFE
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HFE
- genomics-online: cdna clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- orf clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
- Applied Biological Materials Clones for HFE
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | · | 7c | · | 7d |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||||||||
| SP2: | - | - | |||||||||||||||||||||||||||||
| SP3: | - | - | - | ||||||||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||||||||
| SP5: | - | - | - | ||||||||||||||||||||||||||||
| SP6: | - | - | - | - | |||||||||||||||||||||||||||
| SP7: | - | - | - | - | |||||||||||||||||||||||||||
| SP8: | - | - | - | - | - | ||||||||||||||||||||||||||
| SP9: | - | - | - | - | - | ||||||||||||||||||||||||||
| SP10: | - | ||||||||||||||||||||||||||||||
| SP11: | - | - | - | - | - | - | - |
Expression for HFE Gene
This gene is overexpressed in Spleen (31.0) and Placenta (12.9).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for HFE Gene
NURSA nuclear receptor signaling pathways regulating expression of HFE Gene:
HFESOURCE GeneReport for Unigene cluster for HFE Gene:
Hs.233325mRNA Expression by UniProt/SwissProt for HFE Gene:
Q30201-HFE_HUMAN
Tissue specificity:
Expressed in all tissues tested except brain.
Evidence on tissue expression from TISSUES for HFE Gene
- Intestine(4.6)
- Liver(3.3)
- Blood(2.7)
- Heart(2.3)
- Nervous system(2.3)
- Muscle(2.1)
- Pancreas(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for HFE Gene
Germ Layers:
- ectoderm
- endoderm
- mesoderm
Systems:
- cardiovascular
- digestive
- endocrine
- immune
- integumentary
- lymphatic
- nervous
- reproductive
- respiratory
- skeletal muscle
- skeleton
- urinary
Regions:
Head and neck:
- brain
- ear
- eye
- face
- head
- jaw
- mandible
- maxilla
- mouth
- neck
- pituitary gland
- salivary gland
- skull
Thorax:
- breast
- chest wall
- clavicle
- esophagus
- heart
- heart valve
- lung
- rib
- rib cage
- scapula
- sternum
Abdomen:
- abdominal wall
- gallbladder
- intestine
- kidney
- liver
- pancreas
- small intestine
- spleen
Pelvis:
- fallopian tube
- ovary
- pelvis
- penis
- prostate
- testicle
- uterus
- vagina
- vulva
Limb:
- ankle
- arm
- digit
- elbow
- femur
- fibula
- finger
- foot
- forearm
- hand
- hip
- humerus
- knee
- lower limb
- nail
- radius
- shin
- shoulder
- thigh
- tibia
- toe
- ulna
- upper limb
- wrist
General:
- blood
- blood vessel
- bone marrow
- coagulation system
- hair
- peripheral nerve
- peripheral nervous system
- red blood cell
- skin
- spinal column
- vertebrae
- white blood cell
Primer Products
-
OriGene qPCR primer pairs and template standards for HFE
-
OriGene qPCR primer pairs for HFE
- genomics-online: primer clones - Search results for 135 available HFE gene related products
- Overview of 135 available HFE gene related products
-
Recommended
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein tissue co-expression partners for HFE Gene
Orthologs for HFE Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HFE 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | HFE 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | HFE 34 33 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Hfe 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Hfe 16 34 33 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | HFE 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| BFIV21 34 |
|
ManyToMany | |||
| BF1 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany |
- Species where no ortholog for HFE was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Evolution for HFE Gene
- ENSEMBL:
- Gene Tree for HFE (if available)
- TreeFam:
- Gene Tree for HFE (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for HFE: view image
Paralogs for HFE Gene
(135) SIMAP similar genes for HFE Gene using alignment to 42 proteins:
- HFE_HUMAN
- F5B2M9_HUMAN
- F8W7W8_HUMAN
- G3LGQ4_HUMAN
- G3LGQ5_HUMAN
- G3LGQ6_HUMAN
- G3LGQ7_HUMAN
- G3LGQ9_HUMAN
- G3LGR0_HUMAN
- G3LGR1_HUMAN
- H2E8T4_HUMAN
- H2E8T5_HUMAN
- H2E8T7_HUMAN
- H2E8T8_HUMAN
- H2EQK2_HUMAN
- H7C4K4_HUMAN
- I1VA54_HUMAN
- I1VA55_HUMAN
- I1VA56_HUMAN
- I1VA57_HUMAN
- I1VA63_HUMAN
- I1VA65_HUMAN
- I1VA66_HUMAN
- I1VA70_HUMAN
- I1VA71_HUMAN
- I1VA72_HUMAN
- J9QF30_HUMAN
- K0I859_HUMAN
- K0IIP4_HUMAN
- Q6B0J5_HUMAN
- Q86WL1_HUMAN
- Q8MH46_HUMAN
- Q9BXI5_HUMAN
- Q9HC63_HUMAN
- Q9HC65_HUMAN
- Q9HC66_HUMAN
- Q9HC67_HUMAN
- Q9HC69_HUMAN
- Q9HC71_HUMAN
- Q9HC72_HUMAN
- Q9TQ79_HUMAN
- Q9UK37_HUMAN
- HLA-Cw2
- HLA-ABC
- HLA-A*0201V3
- HLA-A*01
- HLA-F
- HLA-A24AK
- MR1
- FLJ45422
- HLA-A*33
- HLA-B41
- HLA-A*31
- HLA
- HLA-Bw62.4
- DKFZp686N10220
- MHC
- HLA-A*0226
- HLA-A*02
- HLA-Bw62.5
- HLA-Bw62.1
- B-1510
- HLA-B*3512
- HLA-A*24
- HLA-E
- HLAC
- HLA-G2.2
- HLA-A*03
- Cw
- B-3501
- HLA-Bw62.3
- HLA-A
- HLA-A*2410
- HLA-B*27
- HLA-G
- HLA-All
- HLA-B*
- HLA-H
- HLA-Cw*
- HLA-A null
- EA1.2
- HLA-B35
- HLA-B57
- B*56
- HLA B
- HLA DQB1
- HLA-B*47RG
- AZGP1
- HLA-B
- HLA-Cw3
- MICA
- MHC class I HLA-A
- HLA C*
- DKFZp686P19218
- HLA-CW
- HLA-B*3531
- HLA-B27
- HLA-A2
- HLA-DQB1*05
- HLA-A*0225
- HLA-Cw
- HLA-C
- HLA-B52
- MICB
- HLA-B*1513
- HLA-B*4202
- MHC-G
- Cw*08
- B*35
- B*15
- HLA-Cw*02023
- HLA-B51
- HLA-B*51IM
- HLA-B*35KM
- HLA-B gene
- HLC-C
- HLA-B52v
- HLA-B*5101 variant
- HLA-B*35JAC
- HLA-Cw*03
- HLA-B15
- HLA-B*58
- HLA-B*13
- HLA-Cw*03MAC
- HLA-B*40
- HLA-B*15IL
- HLA-B*1522
- HLA-Cw*15P
- HLA-DPB1
- SIRPB1
- HLA-B*5501 variant
- HLA-B*07ML
- HLA-B18
- HLA-B1501V2
- HLA-B*5603
- HLA-B*1805
- HLA-B*15UL
- HLA -B
- HLA-DQ3
- HLA-B*35SRE
- HLA-B*18 variant
- HLA-B*15MD
- HLA-DQB2
- HLA-B*0707
- HLA-Cw*07
- Cw*03
- FCGRT
- HLA-DQB
- HLA-DQ-beta
- HLA-DQ
- HLA-B*4012
- HLA G locus
- EA2.1
- HLA-DPB
- HLA-A26
- HLQ-DQB1
- HLA-DQB1
- HLA-Cw*0707
- HLA-DRB2
- HLA-DR-beta1
- HLA-DR-beta 1
- HLA-DQB1/DRB1
- DRB1
- HLA-J
- HLA-DR
- HLA-D
- HLA-DRB1
- HLA-DRB3
- CD1C
- HLA-DQB1*06x
- HLA-Dw12
- PTPNS1
- CD1E
- RAET1H
- HLA-DRB4
- IGHD
- FLJ00382
Variants for HFE Gene
Polymorphic Variants from UniProtKB/Swiss-Prot for HFE Gene
- HFE_HUMAN-Q30201
- Genetic variations in HFE define the transferrin serum level quantitative trait locus 2 (TFQTL2) [MIM:614193]. Iron is essential for biochemical functions such as oxygen transport and oxidative phosphorylation. Excessive iron can cause iron-overload-related liver diseases, whereas iron deficiency can lead to anemia. Iron status can be assessed by measuring the levels of serum iron, serum transferrin, transferrin saturation with iron, and serum ferritin.
| SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs111033557 | benign, HFE POLYMORPHISM | 26,090,939(+) | G/A | coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant | |
| rs111033558 | pathogenic, Hemochromatosis type 1, Hemochromatosis 1 (HFE1) [MIM:235200] | 26,093,215(+) | G/C/T | coding_sequence_variant, missense_variant, non_coding_transcript_variant | |
| rs111033563 | pathogenic, Hemochromatosis type 1, Hemochromatosis 1 (HFE1) [MIM:235200] | 26,092,916(+) | A/C | coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant | |
| rs114758821 | benign, Hereditary hemochromatosis | 26,087,461(+) | G/A | coding_sequence_variant, non_coding_transcript_variant, synonymous_variant | |
| rs118079331 | uncertain-significance, Hereditary hemochromatosis | 26,094,643(+) | C/T | 3_prime_UTR_variant, genic_downstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5926n100 | CNV | gain | 25217958 |
| nsv1023453 | CNV | gain | 25217958 |
| nsv428137 | CNV | loss | 18775914 |
Residual Variation Intolerance Score:
83.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
5.56;
72.23% of all genes are more intolerant (likely to be disease-causing)
