Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HEXDC-IT1 Gene

Subcategory (RNA class) for HEXDC-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HEXDC-IT1 Gene

  • HEXDC Intronic Transcript 1 2 3
  • HEXDC Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HEXDC-IT1 Gene

Previous GeneCards Identifiers for HEXDC-IT1 Gene

  • GC17P080385
  • GC17P080386
  • GC17P080388
  • GC17U902473

Summaries for HEXDC-IT1 Gene

GeneCards Summary for HEXDC-IT1 Gene

HEXDC-IT1 (HEXDC Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HEXDC-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HEXDC-IT1 Gene

Genomics for HEXDC-IT1 Gene

GeneHancer (GH) Regulatory Elements for HEXDC-IT1 Gene

Promoters and enhancers for HEXDC-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I082424 Enhancer 0.6 ENCODE 550.8 -0.8 -758 0.2 CTCF TRIM22 REST ELF1 RAD21 MXD3 ZNF341 ZNF143 PRDM1 SPI1 HEXDC-IT1 C17orf62 TEX19 NARF UTS2R SECTM1 CSNK1D HEXDC OGFOD3
GH17I082417 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -6.4 -6379 2.7 ARNT ARID4B SIN3A ZNF48 ETS1 ELK1 ZNF207 ZNF143 ATF7 KLF13 HEXDC OGFOD3 ENSG00000201239 C17orf62 FOXK2 TEX19 UTS2R NARF SECTM1 ENSG00000262663
GH17I082448 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +24.8 24834 3.2 HDGF SMAD1 MLX ARID4B SIN3A IRF4 SLC30A9 POLR2B ZNF766 E2F8 C17orf62 NARF ENSG00000262663 ENSG00000262652 NARF-IT1 ARL2BPP9 OGFOD3 ENSG00000260563 FAAP100 TBCD
GH17I082438 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +15.0 15028 4.3 SCRT1 CTCF MAZ MAX ELF1 ZEB2 ZIC2 ZEB1 HIC1 POLR2A NARF TEX19 CSNK1D SECTM1 C17orf62 HEXDC-IT1 HEXDC
GH17I082433 Enhancer 0.6 ENCODE dbSUPER 0.4 +8.9 8903 1.1 ZNF121 PKNOX1 NARF TEX19 UTS2R CSNK1D HEXDC-IT1 C17orf62 HEXDC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HEXDC-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HEXDC-IT1 Gene

Genomic Locations for HEXDC-IT1 Gene
chr17:82,425,498-82,427,310
(GRCh38/hg38)
Size:
1,813 bases
Orientation:
Plus strand
chr17:80,383,374-80,385,186
(GRCh37/hg19)

Genomic View for HEXDC-IT1 Gene

Genes around HEXDC-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HEXDC-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HEXDC-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HEXDC-IT1 Gene

Proteins for HEXDC-IT1 Gene

Post-translational modifications for HEXDC-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HEXDC-IT1 Gene

Domains & Families for HEXDC-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HEXDC-IT1 Gene

Function for HEXDC-IT1 Gene

Phenotypes From GWAS Catalog for HEXDC-IT1 Gene

Phenotypes for HEXDC-IT1 Gene

genes like me logo Genes that share phenotypes with HEXDC-IT1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HEXDC-IT1 Gene

Localization for HEXDC-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HEXDC-IT1 Gene

Pathways & Interactions for HEXDC-IT1 Gene

SuperPathways for HEXDC-IT1 Gene

No Data Available

Interacting Proteins for HEXDC-IT1 Gene

Gene Ontology (GO) - Biological Process for HEXDC-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HEXDC-IT1 Gene

Drugs & Compounds for HEXDC-IT1 Gene

No Compound Related Data Available

Transcripts for HEXDC-IT1 Gene

mRNA/cDNA for HEXDC-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HEXDC-IT1 Gene

No ASD Table

Relevant External Links for HEXDC-IT1 Gene

GeneLoc Exon Structure for
HEXDC-IT1
ECgene alternative splicing isoforms for
HEXDC-IT1

Expression for HEXDC-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HEXDC-IT1 Gene

mRNA expression in normal human tissues for HEXDC-IT1 Gene

SOURCE GeneReport for Unigene cluster for HEXDC-IT1 Gene:

Hs.689403
genes like me logo Genes that share expression patterns with HEXDC-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HEXDC-IT1 Gene

Orthologs for HEXDC-IT1 Gene

Evolution for HEXDC-IT1 Gene

ENSEMBL:
Gene Tree for HEXDC-IT1 (if available)
TreeFam:
Gene Tree for HEXDC-IT1 (if available)

No data available for Orthologs for HEXDC-IT1 Gene

Paralogs for HEXDC-IT1 Gene

No data available for Paralogs for HEXDC-IT1 Gene

Variants for HEXDC-IT1 Gene

Additional Variant Information for HEXDC-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HEXDC-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HEXDC-IT1 Gene

Disorders for HEXDC-IT1 Gene

Additional Disease Information for HEXDC-IT1

No disorders were found for HEXDC-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HEXDC-IT1 Gene

Publications for HEXDC-IT1 Gene

No publications were found for HEXDC-IT1 Gene.

Products for HEXDC-IT1 Gene

Sources for HEXDC-IT1 Gene

Content
Loading form....