Aliases for HES2 Gene
Aliases for HES2 Gene
External Ids for HES2 Gene
- HGNC: 16005
- Entrez Gene: 54626
- Ensembl: ENSG00000069812
- OMIM: 609970
- UniProtKB: Q9Y543
Previous GeneCards Identifiers for HES2 Gene
- GC01M006049
- GC01M006281
- GC01U900784
- GC01M006183
- GC01M006406
- GC01M005622
Summaries for HES2 Gene
GeneCards Summary for HES2 Gene
HES2 (Hes Family BHLH Transcription Factor 2) is a Protein Coding gene. Among its related pathways are PI3K-Akt signaling pathway. Gene Ontology (GO) annotations related to this gene include transcription factor binding and double-stranded DNA binding. An important paralog of this gene is HES4.
UniProtKB/Swiss-Prot for HES2 Gene
-
Transcriptional repressor of genes that require a bHLH protein for their transcription.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HES2 Gene
Genomics for HES2 Gene
GeneHancer (GH) Regulatory Elements for HES2 Gene
Promoters and enhancers for HES2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around HES2 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the HES2 gene promoter:
-
- Max
- c-Myc
- LCR-F1
- E47
- AhR
- Arnt
- Pax-4a
- AREB6
- N-Myc
Regulatory Element Products
Genomic Locations for HES2 Gene
Genomic Locations for HES2 Gene
- chr1:6,412,418-6,424,670
- (GRCh38/hg38)
- Size:
- 12,253 bases
- Orientation:
- Minus strand
- chr1:6,472,478-6,484,730
- (GRCh37/hg19)
- Size:
- 12,253 bases
- Orientation:
- Minus strand
Genomic View for HES2 Gene
Genes around HES2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p36.31 by Entrez Gene
- 1p36.31 by HGNC
- 1p36.31 by Ensembl
HES2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HES2 Gene
Proteins for HES2 Gene
-
Protein details for HES2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9Y543-HES2_HUMAN
- Recommended name:
- Transcription factor HES-2
- Protein Accession:
- Q9Y543
- A2RTZ9
- Q96EN4
- Q9Y542
Protein attributes for HES2 Gene
- Size:
- 173 amino acids
- Molecular mass:
- 18470 Da
- Quaternary structure:
-
- Transcription repression requires formation of a complex with a corepressor protein of the Groucho/TLE family.
Protein Expression for HES2 Gene
Post-translational modifications for HES2 Gene
Other Protein References for HES2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for HES2
-
Abcam antibodies for HES2
- Invitrogen Antibodies for HES2 (AFLGC-HES2)
- GeneTex HES2 Antibody for HES2
-
Boster Bio Antibodies for HES2
-
Santa Cruz Biotechnology (SCBT) Antibodies for HES2
Protein Products
-
OriGene Purified Proteins for HES2
- Search Origene for MassSpec and Protein Over-expression Lysates for HES2
- Origene Custom Protein Services for HES2
- Novus Biologicals proteins for HES2
- ProSpec Recombinant Proteins for HES2
- antibodies-online: Search results for 6 available HES2 Proteins ranked by validation data
- Compare Top HES2 Proteins
-
Quality Products:
- Search GeneTex for Proteins for HES2
-
Abcam proteins for HES2
Assay Products
- antibodies-online: Search results for available HES2 related products ranked by validation data
No data available for DME Specific Peptides for HES2 Gene
Domains & Families for HES2 Gene
Gene Families for HES2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Transcription factors
Protein Domains for HES2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for HES2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9Y543UniProtKB/Swiss-Prot:
HES2_HUMAN :- Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box (CACNAG), rather than the canonical E-box (CANNTG).
- Domain:
-
- Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box (CACNAG), rather than the canonical E-box (CANNTG).
- The C-terminal WRPW motif is a transcriptional repression domain necessary for the interaction with Groucho/TLE family members, transcriptional corepressors recruited to specific target DNA by Hairy-related proteins.
Function for HES2 Gene
Molecular function for HES2 Gene
- UniProtKB/Swiss-Prot Function:
- Transcriptional repressor of genes that require a bHLH protein for their transcription.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000978 | RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
| GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding | NAS | 19274049 |
| GO:0001078 | transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding | IEA | -- |
| GO:0003677 | DNA binding | IEA | -- |
| GO:0003690 | double-stranded DNA binding | IEA | -- |
Phenotypes for HES2 Gene
- GenomeRNAi human phenotypes for HES2:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for HES2
-
CRISPR Products
-
OriGene CRISPR knockouts for HES2
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- genomics-online: gRNA clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
- Applied Biological Materials CRISPR for HES2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for HES2
- GenScript: Design CRISPR guide RNA sequences for HES2
miRNA for HES2 Gene
- miRTarBase miRNAs that target HES2
-
- hsa-mir-335-5p (MIRT018989)
- hsa-mir-1273e (MIRT449553)
- hsa-mir-509-3p (MIRT449554)
- hsa-mir-571 (MIRT449555)
- hsa-mir-5002-3p (MIRT449556)
- hsa-mir-219a-1-3p (MIRT449557)
- hsa-mir-4538 (MIRT449558)
- hsa-mir-4453 (MIRT449559)
- hsa-mir-552-5p (MIRT528065)
- hsa-mir-3074-5p (MIRT528066)
- hsa-mir-302d-5p (MIRT528067)
- hsa-mir-302b-5p (MIRT528068)
- hsa-mir-372-5p (MIRT528069)
- hsa-mir-6893-3p (MIRT528070)
- hsa-mir-370-3p (MIRT528071)
- hsa-mir-649 (MIRT528072)
- hsa-mir-490-3p (MIRT528073)
- hsa-mir-6848-3p (MIRT633562)
- hsa-mir-6843-3p (MIRT633563)
- hsa-mir-4454 (MIRT633564)
- hsa-mir-1224-3p (MIRT633565)
- hsa-mir-125a-3p (MIRT633566)
- hsa-mir-6813-3p (MIRT633567)
- hsa-mir-6783-3p (MIRT645118)
- hsa-mir-1343-3p (MIRT645119)
- hsa-mir-23b-5p (MIRT645120)
- hsa-mir-23a-5p (MIRT645121)
- hsa-mir-4772-3p (MIRT645122)
- hsa-mir-3920 (MIRT645123)
- hsa-mir-1304-3p (MIRT645124)
- hsa-mir-6742-3p (MIRT645125)
- hsa-mir-6852-5p (MIRT645126)
- hsa-mir-939-3p (MIRT645127)
- hsa-mir-660-3p (MIRT645128)
- hsa-mir-6890-3p (MIRT645129)
- hsa-mir-1306-5p (MIRT645130)
- hsa-mir-203b-3p (MIRT645131)
- hsa-mir-7158-3p (MIRT645132)
- hsa-mir-378a-5p (MIRT645133)
- hsa-mir-6821-3p (MIRT645134)
- hsa-mir-6790-3p (MIRT645135)
- hsa-mir-4680-5p (MIRT645136)
- hsa-mir-4635 (MIRT645137)
- hsa-mir-3653-5p (MIRT645138)
- hsa-mir-3934-5p (MIRT645139)
- hsa-mir-764 (MIRT645140)
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HES2
- Browse OriGene Inhibitory RNA Products For HES2
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HES2
- genomics-online: shRNA clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
Clone Products
- Sino Biological Human cDNA Clone for HES2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HES2
- Applied Biological Materials Clones for HES2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for HES2
No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HES2 Gene
Localization for HES2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for HES2 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for HES2 Gene
Pathways & Interactions for HES2 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | PI3K-Akt signaling pathway | ||
Pathways by source for HES2 Gene
1 KEGG pathway for HES2 Gene
Interacting Proteins for HES2 Gene
GPS-Prot Interaction Network for HES2
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000122 | negative regulation of transcription by RNA polymerase II | IEA | -- |
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0045892 | negative regulation of transcription, DNA-templated | IEA | -- |
No data available for SIGNOR curated interactions for HES2 Gene
Transcripts for HES2 Gene
mRNA/cDNA for HES2 Gene
- (1) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (52) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000377837 1222 bps (uc001amw.5)
- ENST00000377836 507 bps (uc057bud.1)
- ENST00000471190 349 bps (uc057bue.1)
- ENST00000377834 4262 bps (uc001amx.4)
- ENST00000487437 968 bps (uc057buf.1)
Unigene Clusters for HES2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for HES2
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HES2
- genomics-online: gRNA clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
- Applied Biological Materials CRISPR for HES2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for HES2
- GenScript: Design CRISPR guide RNA sequences for HES2
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HES2
- Browse OriGene Inhibitory RNA Products For HES2
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HES2
- genomics-online: shRNA clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
Clone Products
- Sino Biological Human cDNA Clone for HES2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HES2
- Applied Biological Materials Clones for HES2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d | ^ | 6a | · | 6b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||
| SP2: | - | - | - | - | - | - | - | ||||||||||||||||
| SP3: | |||||||||||||||||||||||
| SP4: | |||||||||||||||||||||||
| SP5: | - | ||||||||||||||||||||||
| SP6: | - | - | - | - | - |
Expression for HES2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
mRNA differential expression in normal tissues according to GTEx for HES2 Gene
This gene is overexpressed in Esophagus - Mucosa (x13.1), Vagina (x8.2), Skin - Not Sun Exposed (Suprapubic) (x7.5), Skin - Sun Exposed (Lower leg) (x6.8), and Cervix - Ectocervix (x4.4).
This gene is overexpressed in Peripheral blood mononuclear cells (65.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for HES2 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of HES2 Gene:
HES2SOURCE GeneReport for Unigene cluster for HES2 Gene:
Hs.118727mRNA Expression by UniProt/SwissProt for HES2 Gene:
Q9Y543-HES2_HUMAN
Tissue specificity:
Expressed in placenta, pancreatic cancer, colon cancer with RER, cervical cancer, and in head and neck tumors.
Evidence on tissue expression from TISSUES for HES2 Gene
- Eye(4)
Primer Products
-
OriGene qPCR primer pairs for HES2
Gene Expression Assay Products
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for HES2 Gene
Orthologs for HES2 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HES2 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | HES2 34 33 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Hes2 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Hes2 16 34 33 |
|
||
| dog (Canis familiaris) |
Mammalia | HES2 34 33 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | HES2 34 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | HES2 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | -- 34 |
|
ManyToMany | |
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | hes2 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | hes2.1 34 33 |
|
OneToMany | |
| hes2.2 34 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | h 34 |
|
ManyToMany | |
| Side 34 |
|
ManyToMany | |||
| dpn 34 |
|
ManyToMany | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne |
- Species where no ortholog for HES2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for HES2 Gene
- ENSEMBL:
- Gene Tree for HES2 (if available)
- TreeFam:
- Gene Tree for HES2 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for HES2: view image
Paralogs for HES2 Gene
Variants for HES2 Gene
| SNP ID | Clin | Chr 01 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000107919 | -- | 6,418,651(-) | A/C | 3_prime_UTR_variant | |
| rs1000281813 | -- | 6,420,191(-) | G/A | upstream_transcript_variant | |
| rs1000583287 | -- | 6,421,305(-) | A/G | upstream_transcript_variant | |
| rs1001640357 | -- | 6,415,698(-) | C/G | 3_prime_UTR_variant | |
| rs1002287328 | -- | 6,420,282(-) | G/A | upstream_transcript_variant |
Gene Damage Index Score:
3.36;
53.91% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for HES2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HES2
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HES2 Gene
Disorders for HES2 Gene
Additional Disease Information for HES2
No disorders were found for HES2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HES2 Gene
Publications for HES2 Gene
- Identification and characterization of human HES2, HES3, and HES5 genes in silico. (PMID: 15254753) Katoh M … Katoh M (International journal of oncology 2004) 2 3 4 22 58
- Integrative genomic analyses on HES/HEY family: Notch-independent HES1, HES3 transcription in undifferentiated ES cells, and Notch-dependent HES1, HES5, HEY1, HEY2, HEYL transcription in fetal tissues, adult tissues, or cancer. (PMID: 17611704) Katoh M … Katoh M (International journal of oncology 2007) 3 22 58
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
Products for HES2 Gene
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- antibodies-online: Search results for 40 available HES2 Antibodies ranked by validation data
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- Quality Products:
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- Horizon Cell Lines for HES2
- genomics-online: cdna clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
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- Overview of 89 available HES2 gene related products
- genomics-online: gRNA clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
- genomics-online: primer clones - Search results for 89 available HES2 gene related products
- Overview of 89 available HES2 gene related products
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- Overview of 89 available HES2 gene related products
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- Boster Bio Antibodies for HES2
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Sources for HES2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
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