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Aliases for HERC2P9 Gene

Aliases for HERC2P9 Gene

  • Hect Domain And RLD 2 Pseudogene 9 2 3 5

External Ids for HERC2P9 Gene

Previous GeneCards Identifiers for HERC2P9 Gene

  • GC15P028875
  • GC15M006567
  • GC15P028835

Summaries for HERC2P9 Gene

GeneCards Summary for HERC2P9 Gene

HERC2P9 (Hect Domain And RLD 2 Pseudogene 9) is a Pseudogene.

Additional gene information for HERC2P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HERC2P9 Gene

Genomics for HERC2P9 Gene

GeneHancer (GH) Regulatory Elements for HERC2P9 Gene

Promoters and enhancers for HERC2P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I028588 Promoter 1 Ensembl 550.8 +0.3 309 2.4 HDAC1 MXI1 RB1 ZBTB40 ZNF335 GATAD1 ZNF366 POLR2A IKZF2 L3MBTL2 HERC2P9 HERC2P11 GC15P028599
GH15I028896 Enhancer 0.8 ENCODE 11 +307.6 307639 1.2 FOXA2 ZSCAN4 INSM2 ZEB1 ZNF155 ZNF366 ZNF391 FOS KLF13 SP3 HERC2 LOC100419574 RPL41P2 HERC2P9 ENSG00000259644 APBA2 ENSG00000259277
GH15I028831 Promoter/Enhancer 1.4 Ensembl ENCODE 4.9 +243.2 243208 1.8 PKNOX1 ATF1 ARNT ZNF121 GLIS2 E2F8 FOS ATF7 NFYC ZNF518A LOC100129687 ENSG00000260844 PDCD6IPP2 HERC2P9 GOLGA6L7
GH15I028984 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 6.1 +395.8 395788 1.4 MXI1 SP2 ZNF398 ZIC2 ATF2 POLR2A ZNF629 CREB1 SPI1 APBA2 HERC2P9 NSMCE3 ENSG00000259277 PIR55356
GH15I028737 Promoter/Enhancer 1.2 Ensembl ENCODE 5.4 +148.7 148708 2.4 CTCF KLF1 RB1 BACH1 SIN3A ZBTB40 ZNF335 CTBP1 ZNF316 MTA3 GOLGA8M PIR44347 WHAMMP2 HERC2P9 LOC100419574
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HERC2P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HERC2P9 Gene

Genomic Locations for HERC2P9 Gene
chr15:28,589,492-28,685,264
(GRCh38/hg38)
Size:
95,773 bases
Orientation:
Plus strand
chr15:28,834,638-28,930,410
(GRCh37/hg19)

Genomic View for HERC2P9 Gene

Genes around HERC2P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HERC2P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HERC2P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HERC2P9 Gene

Proteins for HERC2P9 Gene

Post-translational modifications for HERC2P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HERC2P9 Gene

Domains & Families for HERC2P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HERC2P9 Gene

Function for HERC2P9 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HERC2P9 Gene

Localization for HERC2P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HERC2P9 Gene

Pathways & Interactions for HERC2P9 Gene

SuperPathways for HERC2P9 Gene

No Data Available

Interacting Proteins for HERC2P9 Gene

Gene Ontology (GO) - Biological Process for HERC2P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HERC2P9 Gene

Drugs & Compounds for HERC2P9 Gene

No Compound Related Data Available

Transcripts for HERC2P9 Gene

mRNA/cDNA for HERC2P9 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HERC2P9 Gene

No ASD Table

Relevant External Links for HERC2P9 Gene

GeneLoc Exon Structure for
HERC2P9
ECgene alternative splicing isoforms for
HERC2P9

Expression for HERC2P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HERC2P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of HERC2P9 Gene:

HERC2P9
genes like me logo Genes that share expression patterns with HERC2P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HERC2P9 Gene

Orthologs for HERC2P9 Gene

Evolution for HERC2P9 Gene

ENSEMBL:
Gene Tree for HERC2P9 (if available)
TreeFam:
Gene Tree for HERC2P9 (if available)

No data available for Orthologs for HERC2P9 Gene

Paralogs for HERC2P9 Gene

No data available for Paralogs for HERC2P9 Gene

Variants for HERC2P9 Gene

Sequence variations from dbSNP and Humsavar for HERC2P9 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000038648 -- 28,672,628(+) C/G/T intron_variant
rs1000154321 -- 28,673,086(+) G/A intron_variant
rs1000282691 -- 28,658,567(+) G/A intron_variant
rs1000619261 -- 28,652,666(+) G/C upstream_transcript_variant
rs1000631411 -- 28,671,090(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HERC2P9 Gene

Variant ID Type Subtype PubMed ID
dgv1398e59 CNV duplication 20981092
dgv2491n100 CNV gain 25217958
dgv2492n100 CNV gain 25217958
dgv2493n100 CNV loss 25217958
dgv725e212 CNV loss 25503493
esv26019 CNV gain+loss 19812545
esv2674813 CNV deletion 23128226
esv2749506 CNV deletion 23290073
esv2760021 CNV gain+loss 17122850
esv3347385 CNV duplication 20981092
esv3386648 CNV duplication 20981092
esv3403700 CNV duplication 20981092
esv994657 CNV loss 20482838
nsv1036106 CNV gain+loss 25217958
nsv1036406 CNV gain 25217958
nsv1038377 CNV gain 25217958
nsv1128725 CNV duplication 24896259
nsv1145837 CNV duplication 26484159
nsv1148560 OTHER inversion 26484159
nsv428299 CNV loss 18775914
nsv469678 CNV gain 16826518
nsv471678 CNV loss 15918152
nsv568662 CNV gain 21841781
nsv832942 CNV gain 17160897
nsv9216 CNV gain+loss 18304495
nsv9217 CNV gain+loss 18304495
nsv9218 CNV loss 18304495
nsv976908 CNV duplication 23825009
nsv977683 CNV duplication 23825009
nsv977684 CNV duplication 23825009
nsv984137 CNV duplication 23825009

Additional Variant Information for HERC2P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HERC2P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HERC2P9 Gene

Disorders for HERC2P9 Gene

Additional Disease Information for HERC2P9

No disorders were found for HERC2P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HERC2P9 Gene

Publications for HERC2P9 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  2. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for HERC2P9 Gene

Sources for HERC2P9 Gene

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