Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HERC2P7 Gene

Aliases for HERC2P7 Gene

  • Hect Domain And RLD 2 Pseudogene 7 2 3

External Ids for HERC2P7 Gene

Previous GeneCards Identifiers for HERC2P7 Gene

  • GC15U990057
  • GC15P026247
  • GC15P028573
  • GC15P023713
  • GC15M001693
  • GC15P023744
  • GC15P023754
  • GC15P023782
  • GC15P023812
  • GC15P023846
  • GC15P023876
  • GC15P023907

Summaries for HERC2P7 Gene

GeneCards Summary for HERC2P7 Gene

HERC2P7 (Hect Domain And RLD 2 Pseudogene 7) is a Pseudogene.

Additional gene information for HERC2P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HERC2P7 Gene

Genomics for HERC2P7 Gene

GeneHancer (GH) Regulatory Elements for HERC2P7 Gene

Promoters and enhancers for HERC2P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I022837 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.1 -357.0 -357024 3.8 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B E2F8 NIPA2 HERC2P7 CYFIP1 ENSG00000259098 PIR62888
GH15I023038 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.1 -556.9 -556881 2.2 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF207 TUBGCP5 NIPA2 HERC2P7 ENSG00000259098 CYFIP1
GH15I022226 Enhancer 0.7 dbSUPER 10.8 +252.1 252112 6.6 SUZ12 NFIB TSC22D4 SALL2 MCM2 RAD21 MCM3 ZNF571 RXRA ZC3H11A ENSG00000247765 LOC646214 HERC2P7 PIR62884 MIR1268A LOC101928039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HERC2P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HERC2P7 Gene

Genomic Locations for HERC2P7 Gene
chr15:22,479,153-22,482,374
(GRCh38/hg38)
Size:
3,222 bases
Orientation:
Minus strand
chr15:23,388,289-23,393,943
(GRCh37/hg19)

Genomic View for HERC2P7 Gene

Genes around HERC2P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HERC2P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HERC2P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HERC2P7 Gene

Proteins for HERC2P7 Gene

Post-translational modifications for HERC2P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HERC2P7 Gene

Domains & Families for HERC2P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HERC2P7 Gene

Function for HERC2P7 Gene

Molecular function for HERC2P7 Gene

GENATLAS Biochemistry:
HECT domain and RLD2,pseudogene 7

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HERC2P7 Gene

Localization for HERC2P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HERC2P7 Gene

Pathways & Interactions for HERC2P7 Gene

SuperPathways for HERC2P7 Gene

No Data Available

Interacting Proteins for HERC2P7 Gene

Gene Ontology (GO) - Biological Process for HERC2P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HERC2P7 Gene

Drugs & Compounds for HERC2P7 Gene

No Compound Related Data Available

Transcripts for HERC2P7 Gene

mRNA/cDNA for HERC2P7 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HERC2P7 Gene

Hect domain and RLD 2 pseudogene 7:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HERC2P7 Gene

No ASD Table

Relevant External Links for HERC2P7 Gene

GeneLoc Exon Structure for
HERC2P7
ECgene alternative splicing isoforms for
HERC2P7

Expression for HERC2P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HERC2P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of HERC2P7 Gene:

HERC2P7

SOURCE GeneReport for Unigene cluster for HERC2P7 Gene:

Hs.146211
genes like me logo Genes that share expression patterns with HERC2P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HERC2P7 Gene

Orthologs for HERC2P7 Gene

Evolution for HERC2P7 Gene

ENSEMBL:
Gene Tree for HERC2P7 (if available)
TreeFam:
Gene Tree for HERC2P7 (if available)

No data available for Orthologs for HERC2P7 Gene

Paralogs for HERC2P7 Gene

No data available for Paralogs for HERC2P7 Gene

Variants for HERC2P7 Gene

Sequence variations from dbSNP and Humsavar for HERC2P7 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1006279457 -- 22,482,875(-) AAAAAAA/AAAAAAAA upstream_transcript_variant
rs1016272531 -- 22,482,864(-) C/T upstream_transcript_variant
rs1016725120 -- 22,483,924(-) T/C upstream_transcript_variant
rs1026020128 -- 22,482,572(-) A/C upstream_transcript_variant
rs1029516346 -- 22,484,035(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HERC2P7 Gene

Variant ID Type Subtype PubMed ID
nsv511042 OTHER inversion 20534489
nsv433430 CNV gain 18776910
nsv433429 CNV gain 18776910
nsv1149605 CNV duplication 26484159
nsv1078378 CNV duplication 25765185
nsv1040546 CNV gain 25217958
nsv1035969 CNV loss 25217958
esv3892626 CNV gain+loss 25118596
esv3569265 CNV gain 25503493
esv3435335 CNV duplication 20981092
esv3423785 CNV duplication 20981092
esv3335466 CNV duplication 20981092
esv28050 CNV gain+loss 19812545
esv2474417 CNV loss 19546169
dgv2410n100 CNV gain 25217958
dgv2408n100 CNV loss 25217958
dgv2407n100 CNV gain+loss 25217958
dgv1170n106 CNV duplication 24896259

Additional Variant Information for HERC2P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HERC2P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HERC2P7 Gene

Disorders for HERC2P7 Gene

Additional Disease Information for HERC2P7

No disorders were found for HERC2P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HERC2P7 Gene

Publications for HERC2P7 Gene

  1. The ancestral gene for transcribed, low-copy repeats in the Prader-Willi/Angelman region encodes a large protein implicated in protein trafficking, which is deficient in mice with neuromuscular and spermiogenic abnormalities. (PMID: 9949213) Ji Y … Nicholls RD (Human molecular genetics 1999) 3 58

Products for HERC2P7 Gene

Sources for HERC2P7 Gene

Content
Loading form....