Aliases for HECTD2-AS1 Gene

Subcategory (RNA class) for HECTD2-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for HECTD2-AS1 Gene

  • HECTD2 Antisense RNA 1 2 3
  • HECTD2-AS1 2 170
  • NONHSAG006521 94
  • HSALNG0079658 169
  • HSALNG0079656 169

External Ids for HECTD2-AS1 Gene

Summaries for HECTD2-AS1 Gene

GeneCards Summary for HECTD2-AS1 Gene

HECTD2-AS1 (HECTD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HECTD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HECTD2-AS1 Gene

Genomics for HECTD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for HECTD2-AS1 Gene


GeneHancers around HECTD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HECTD2-AS1 Gene

Genomic Locations for HECTD2-AS1 Gene
chr10:91,306,959-91,613,729
(GRCh38/hg38)
Size:
306,771 bases
Orientation:
Minus strand
chr10:93,066,719-93,299,337
(GRCh37/hg19)
Size:
232,619 bases
Orientation:
Minus strand

Genomic View for HECTD2-AS1 Gene

Genes around HECTD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HECTD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HECTD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HECTD2-AS1 Gene

Proteins for HECTD2-AS1 Gene

Post-translational modifications for HECTD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HECTD2-AS1 Gene

Domains & Families for HECTD2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HECTD2-AS1 Gene

Function for HECTD2-AS1 Gene

Phenotypes From GWAS Catalog for HECTD2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HECTD2-AS1 Gene

Localization for HECTD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HECTD2-AS1 Gene

Pathways & Interactions for HECTD2-AS1 Gene

PathCards logo

SuperPathways for HECTD2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HECTD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HECTD2-AS1 Gene

Drugs & Compounds for HECTD2-AS1 Gene

No Compound Related Data Available

Transcripts for HECTD2-AS1 Gene

mRNA/cDNA for HECTD2-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HECTD2-AS1 Gene

No ASD Table

Relevant External Links for HECTD2-AS1 Gene

GeneLoc Exon Structure for
HECTD2-AS1
ECgene alternative splicing isoforms for
HECTD2-AS1

Expression for HECTD2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HECTD2-AS1 Gene

Orthologs for HECTD2-AS1 Gene

No data available for Orthologs and Evolution for HECTD2-AS1 Gene

Paralogs for HECTD2-AS1 Gene

No data available for Paralogs for HECTD2-AS1 Gene

Variants for HECTD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HECTD2-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000000543 -- 91,556,098(-) C/T intron_variant
rs1000005287 -- 91,330,826(-) AAA/AA intron_variant
rs1000010439 -- 91,349,979(-) A/T intron_variant
rs1000015057 -- 91,562,855(-) T/C intron_variant
rs1000018277 -- 91,420,328(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HECTD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv274e212 CNV loss 25503493
esv1003018 OTHER inversion 20482838
esv1767604 OTHER inversion 17803354
esv2189509 CNV deletion 18987734
esv23967 CNV gain 19812545
esv2421381 CNV duplication 20811451
esv2739507 CNV deletion 23290073
esv2739518 CNV deletion 23290073
esv33149 CNV loss 17666407
esv3345260 OTHER inversion 20981092
esv3546675 CNV deletion 23714750
esv3546676 CNV deletion 23714750
esv3579071 CNV loss 25503493
esv3624204 CNV loss 21293372
esv3624205 CNV loss 21293372
esv3624206 CNV loss 21293372
esv3624207 CNV loss 21293372
esv3624209 CNV loss 21293372
nsv1040403 CNV gain 25217958
nsv1127131 CNV deletion 24896259
nsv433413 CNV gain 18776910
nsv436654 OTHER inversion 17901297
nsv473311 CNV novel sequence insertion 20440878
nsv551913 CNV loss 21841781
nsv551914 CNV loss 21841781
nsv7208 OTHER inversion 18451855
nsv7488 CNV insertion 18451855
nsv948134 CNV duplication 23825009
nsv950993 CNV duplication 24416366

Additional Variant Information for HECTD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HECTD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HECTD2-AS1 Gene

Disorders for HECTD2-AS1 Gene

Additional Disease Information for HECTD2-AS1

No disorders were found for HECTD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECTD2-AS1 Gene

Publications for HECTD2-AS1 Gene

  1. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. (PMID: 20418890) Tobacco and Genetics Consortium (Nature genetics 2010) 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 56

Products for HECTD2-AS1 Gene

Sources for HECTD2-AS1 Gene