Aliases for HE856257 Gene

Data sources for HE856257 Gene:

RNA type for HE856257 Gene

snRNA

Aliases for HE856257 Gene

No Aliases found

No data available for External Ids for HE856257 Gene

Summaries for HE856257 Gene

GeneCards Summary for HE856257 Gene

HE856257 is an RNA Gene, and is affiliated with the snRNA class.

Additional gene information for HE856257 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HE856257 Gene

Genomics for HE856257 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HE856257 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J115641 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -47.3 -47262 2.8 ZNF600 NCOR1 IKZF1 ZNF580 ZNF223 BRCA1 POLR2A NFIC ZIC2 ZBTB10 VANGL1 ATP1A1-AS1 SIKE1 ENSG00000207502 CD58 HE856257 CASQ2
GH01J115668 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -19.6 -19587 4.2 IKZF1 ZNF600 JUND ZIC2 EP300 CTBP1 CUX1 RUNX1 CTCF ZNF316 ENSG00000207502 CASQ2 HE856257 VANGL1
GH01J115646 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -40.9 -40930 5.5 BCLAF1 IKZF1 ZNF600 ZNF592 ATF2 BRCA1 NFIC ZIC2 BCL11A SIN3A VANGL1 ENSG00000207502 CASQ2 HE856257
GH01J115676 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -11.6 -11578 4.6 SP1 JUND BCL11A REST SMC3 TCF7L2 BMI1 RFX1 IKZF1 RAD21 VANGL1 ENSG00000207502 HE856257 CASQ2
GH01J115713 Enhancer 1 Ensembl ENCODE 0.4 +23.6 23585 5.7 CEBPA CEBPB FOXA1 ZNF217 THAP11 MBD2 ELF1 FOXA2 CTBP1 SMAD4 CASQ2 ENSG00000237993 HSALNG0006287 HE856257 VANGL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HE856257 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HE856257 Gene

Latest Assembly
chr1:115,689,863-115,689,941
(GRCh38/hg38)
Size:
79 bases
Orientation:
Plus strand

Genomic View for HE856257 Gene

Genes around HE856257 on UCSC Golden Path with GeneCards custom track
HE856257 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HE856257 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HE856257 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HE856257 Gene

Proteins for HE856257 Gene

Post-translational modifications for HE856257 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HE856257 Gene

Domains & Families for HE856257 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HE856257 Gene

Function for HE856257 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HE856257 Gene

Localization for HE856257 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HE856257 Gene

Pathways & Interactions for HE856257 Gene

PathCards logo

SuperPathways for HE856257 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HE856257 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HE856257 Gene

Drugs & Compounds for HE856257 Gene

No Compound Related Data Available

Transcripts for HE856257 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HE856257 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000120931_9606 snRNA 79 1

ENA: HE856257.1:1..79:ncRNA,

HE856257 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HE856257 Gene

No ASD Table

Relevant External Links for HE856257 Gene

GeneLoc Exon Structure for
HE856257

No data available for mRNA/cDNA for HE856257 Gene

Expression for HE856257 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HE856257 Gene

Orthologs for HE856257 Gene

No data available for Orthologs and Evolution for HE856257 Gene

Paralogs for HE856257 Gene

No data available for Paralogs for HE856257 Gene

Variants for HE856257 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HE856257 Gene

Disorders for HE856257 Gene

No disorders were found for HE856257 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HE856257 Gene

Publications for HE856257 Gene

No publications were found for HE856257 Gene.

No data available for Mastermind for HE856257 Gene

Products for HE856257 Gene

Sources for HE856257 Gene