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Aliases for HDHD5-AS1 Gene

Subcategory (RNA class) for HDHD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HDHD5-AS1 Gene

  • HDHD5 Antisense RNA 1 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 4 (Non-Protein Coding) 2 3
  • CECR5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Cat Eye Syndrome Chromosome Region, Candidate 4 2
  • Non-Protein Coding RNA 17 2
  • CECR5 Antisense RNA 1 2
  • NCRNA00017 3
  • CECR5-AS1 3
  • CECR4 3

External Ids for HDHD5-AS1 Gene

Previous HGNC Symbols for HDHD5-AS1 Gene

  • CECR4
  • CECR5-AS1

Summaries for HDHD5-AS1 Gene

GeneCards Summary for HDHD5-AS1 Gene

HDHD5-AS1 (HDHD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HDHD5-AS1 include Cat Eye Syndrome.

Additional gene information for HDHD5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDHD5-AS1 Gene

Genomics for HDHD5-AS1 Gene

GeneHancer (GH) Regulatory Elements for HDHD5-AS1 Gene

Promoters and enhancers for HDHD5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J017157 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 -1.4 -1381 4.8 SP1 ZFX SIX5 CBFA2T2 NKRF MLLT1 ZNF687 NCOA6 ZBTB7A SP7 HDHD5 HDHD5-AS1 TMEM121B LINC01664 GC22P017137
GH22J017637 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.9 +479.7 479654 3.3 ZFX CC2D1A ELF3 ZKSCAN8 ZNF148 NKRF MLLT1 CEBPG RERE POLR2A BCL2L13 ATP6V1E1 SLC25A18 BID HDHD5-AS1 PIR47030
GH22J017999 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 11.3 +841.4 841436 3.2 ZFX CC2D1A SP1 ELF3 MNT SIX5 ZNF148 NKRF POLR2A ZNF121 MICAL3 E2F6P1 ENSG00000093100 HDHD5-AS1 ENSG00000236890 HDHD5 ENSG00000234913 ENSG00000235445
GH22J017969 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10 +814.0 814016 8.4 SP1 ELF3 CBFA2T2 CEBPG ZNF687 TRIM24 RELA CREM MLLT1 ZNF644 MICAL3 ENSG00000093100 HDHD5-AS1 MIR648 PIR53397
GH22J017131 Enhancer 0.7 Ensembl ENCODE 12.7 -28.1 -28071 2.6 ZIC2 RFX1 POLR2A BMI1 CTCF GLIS1 HDHD5-AS1 HDHD5 CECR2 ADA2 CECR3 TMEM121B LINC01664 IL17RA GC22P017136
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HDHD5-AS1 Gene

Genomic Locations for HDHD5-AS1 Gene
chr22:17,159,384-17,165,445
(GRCh38/hg38)
Size:
6,062 bases
Orientation:
Plus strand
chr22:17,640,274-17,646,335
(GRCh37/hg19)
Size:
6,062 bases
Orientation:
Plus strand

Genomic View for HDHD5-AS1 Gene

Genes around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDHD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDHD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDHD5-AS1 Gene

Proteins for HDHD5-AS1 Gene

Post-translational modifications for HDHD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDHD5-AS1 Gene

Domains & Families for HDHD5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDHD5-AS1 Gene

Function for HDHD5-AS1 Gene

Phenotypes From GWAS Catalog for HDHD5-AS1 Gene

Animal Model Products

CRISPR Products

miRNA for HDHD5-AS1 Gene

miRTarBase miRNAs that target HDHD5-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HDHD5-AS1 Gene

Localization for HDHD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HDHD5-AS1 Gene

Pathways & Interactions for HDHD5-AS1 Gene

PathCards logo

SuperPathways for HDHD5-AS1 Gene

No Data Available

Interacting Proteins for HDHD5-AS1 Gene

Gene Ontology (GO) - Biological Process for HDHD5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDHD5-AS1 Gene

Drugs & Compounds for HDHD5-AS1 Gene

No Compound Related Data Available

Transcripts for HDHD5-AS1 Gene

mRNA/cDNA for HDHD5-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HDHD5-AS1 Gene

No ASD Table

Relevant External Links for HDHD5-AS1 Gene

GeneLoc Exon Structure for
HDHD5-AS1
ECgene alternative splicing isoforms for
HDHD5-AS1

Expression for HDHD5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDHD5-AS1 Gene

Orthologs for HDHD5-AS1 Gene

Evolution for HDHD5-AS1 Gene

ENSEMBL:
Gene Tree for HDHD5-AS1 (if available)
TreeFam:
Gene Tree for HDHD5-AS1 (if available)

No data available for Orthologs for HDHD5-AS1 Gene

Paralogs for HDHD5-AS1 Gene

No data available for Paralogs for HDHD5-AS1 Gene

Variants for HDHD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDHD5-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000392545 -- 17,158,718(+) GGGGG/GGGG upstream_transcript_variant
rs1001097445 -- 17,162,677(+) T/G intron_variant
rs1001149751 -- 17,162,326(+) A/C intron_variant
rs1001325462 -- 17,157,825(+) A/G upstream_transcript_variant
rs1002101704 -- 17,161,229(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HDHD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
nsv1064641 CNV gain 25217958
nsv1067241 CNV loss 25217958
nsv509805 CNV insertion 20534489
nsv828924 CNV gain 20364138

Additional Variant Information for HDHD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDHD5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HDHD5-AS1 Gene

Disorders for HDHD5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HDHD5-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HDHD5-AS1

genes like me logo Genes that share disorders with HDHD5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HDHD5-AS1 Gene

Publications for HDHD5-AS1 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz TK … McDermid HE (Genome research 2001) 2 3 58

Products for HDHD5-AS1 Gene

Sources for HDHD5-AS1 Gene

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