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Aliases for HDAC4-AS1 Gene

Subcategory (RNA class) for HDAC4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HDAC4-AS1 Gene

  • HDAC4 Antisense RNA 1 2 3 5

External Ids for HDAC4-AS1 Gene

Summaries for HDAC4-AS1 Gene

GeneCards Summary for HDAC4-AS1 Gene

HDAC4-AS1 (HDAC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HDAC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDAC4-AS1 Gene

Genomics for HDAC4-AS1 Gene

GeneHancer (GH) Regulatory Elements for HDAC4-AS1 Gene

Promoters and enhancers for HDAC4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J239398 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 615.5 -0.7 -735 4.6 SP1 ZFX ELF3 MNT CBFA2T2 ZNF148 NKRF POLR2A MLLT1 ZNF121 HDAC4-AS1 HDAC4 MIR4269 MIR2467
GH02J239272 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -124.4 -124423 8.4 ZFX ZKSCAN8 ZNF687 CDC5L BACH1 MAFK TRIM24 CREM SMARCA4 IKZF1 HDAC4 MIR4269 HDAC4-AS1 GC02M239271 MGC16025
GH02J239263 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -135.0 -134984 6.2 SP1 CC2D1A ZNF148 AHR TRIM24 KLF14 MLLT1 RAD21 EGR1 IKZF1 HDAC4 HDAC4-AS1 MIR4269 GC02M239271 MGC16025
GH02J239220 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -176.8 -176767 8.1 ELF3 CEBPG MAFK TFE3 SP1 HNF1A ZNF384 PKNOX1 RXRA ZIC2 HDAC4 HDAC4-AS1 MGC16025 GC02M239271
GH02J239238 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -161.3 -161325 3.8 SP1 RXRA ZNF512 SOX6 CTBP1 YY1 MEF2D JUND NCOR1 RCOR1 HDAC4 HDAC4-AS1 MGC16025 GC02M239271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HDAC4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HDAC4-AS1 Gene

Genomic Locations for HDAC4-AS1 Gene
chr2:239,401,436-239,402,364
(GRCh38/hg38)
Size:
929 bases
Orientation:
Plus strand

Genomic View for HDAC4-AS1 Gene

Genes around HDAC4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDAC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC4-AS1 Gene

Proteins for HDAC4-AS1 Gene

Post-translational modifications for HDAC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC4-AS1 Gene

Domains & Families for HDAC4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDAC4-AS1 Gene

Function for HDAC4-AS1 Gene

Phenotypes From GWAS Catalog for HDAC4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC4-AS1 Gene

Localization for HDAC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HDAC4-AS1 Gene

Pathways & Interactions for HDAC4-AS1 Gene

PathCards logo

SuperPathways for HDAC4-AS1 Gene

No Data Available

Interacting Proteins for HDAC4-AS1 Gene

Gene Ontology (GO) - Biological Process for HDAC4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDAC4-AS1 Gene

Drugs & Compounds for HDAC4-AS1 Gene

No Compound Related Data Available

Transcripts for HDAC4-AS1 Gene

mRNA/cDNA for HDAC4-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC4-AS1 Gene

No ASD Table

Relevant External Links for HDAC4-AS1 Gene

GeneLoc Exon Structure for
HDAC4-AS1
ECgene alternative splicing isoforms for
HDAC4-AS1

Expression for HDAC4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDAC4-AS1 Gene

Orthologs for HDAC4-AS1 Gene

Evolution for HDAC4-AS1 Gene

ENSEMBL:
Gene Tree for HDAC4-AS1 (if available)
TreeFam:
Gene Tree for HDAC4-AS1 (if available)

No data available for Orthologs for HDAC4-AS1 Gene

Paralogs for HDAC4-AS1 Gene

No data available for Paralogs for HDAC4-AS1 Gene

Variants for HDAC4-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDAC4-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000420066 -- 239,402,864(+) G/A downstream_transcript_variant
rs1000527584 -- 239,400,085(+) G/A upstream_transcript_variant
rs1000919307 -- 239,401,917(+) G/A/C/T intron_variant, non_coding_transcript_variant
rs1001977598 -- 239,400,027(+) A/G upstream_transcript_variant
rs1003029460 -- 239,400,495(+) G/A upstream_transcript_variant

Additional Variant Information for HDAC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HDAC4-AS1 Gene

Disorders for HDAC4-AS1 Gene

No disorders were found for HDAC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HDAC4-AS1 Gene

Publications for HDAC4-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

No data available for External Links for HDAC4-AS1 Gene

Products for HDAC4-AS1 Gene

Sources for HDAC4-AS1 Gene

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