Aliases for HDAC4-AS1 Gene

Subcategory (RNA class) for HDAC4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for HDAC4-AS1 Gene

  • HDAC4 Antisense RNA 1 2 3 5
  • HDAC4-AS1 2 5
  • HSALNG0023501 164
  • Lnc-TWIST2-14 165

External Ids for HDAC4-AS1 Gene

Summaries for HDAC4-AS1 Gene

GeneCards Summary for HDAC4-AS1 Gene

HDAC4-AS1 (HDAC4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HDAC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HDAC4-AS1 Gene

Genomics for HDAC4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HDAC4-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HDAC4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HDAC4-AS1 Gene

Genomic Locations for HDAC4-AS1 Gene
chr2:239,401,436-239,402,364
(GRCh38/hg38)
Size:
929 bases
Orientation:
Plus strand

Genomic View for HDAC4-AS1 Gene

Genes around HDAC4-AS1 on UCSC Golden Path with GeneCards custom track
HDAC4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HDAC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC4-AS1 Gene

Proteins for HDAC4-AS1 Gene

Post-translational modifications for HDAC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC4-AS1 Gene

Domains & Families for HDAC4-AS1 Gene

Gene Families for HDAC4-AS1 Gene

genes like me logo Genes that share domains with HDAC4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HDAC4-AS1 Gene

Function for HDAC4-AS1 Gene

Phenotypes From GWAS Catalog for HDAC4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC4-AS1 Gene

Localization for HDAC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HDAC4-AS1 Gene

Pathways & Interactions for HDAC4-AS1 Gene

PathCards logo

SuperPathways for HDAC4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HDAC4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HDAC4-AS1 Gene

Drugs & Compounds for HDAC4-AS1 Gene

No Compound Related Data Available

Transcripts for HDAC4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HDAC4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DB98B_9606 lncRNA 384 5

HGNC: 54064,

RefSeq: NR_135575,

Ensembl: ENST00000409526 (view in UCSC) ,

LncBook: HSALNT0049634,

LNCipedia: lnc-TWIST2-14:1,

URS00007DA05F_9606 lncRNA 455 3

Ensembl: ENST00000413029 (view in UCSC) ,

LncBook: HSALNT0049638,

LNCipedia: lnc-TWIST2-14:4,

URS00007E2EF4_9606 lncRNA 414 3

Ensembl: ENST00000428471 (view in UCSC) ,

LncBook: HSALNT0049636,

LNCipedia: lnc-TWIST2-14:3,

URS0000A76DBD_9606 lncRNA 540 2

RefSeq: NR_135576,

LNCipedia: lnc-TWIST2-14:2,

URS0000A7711D_9606 lncRNA 414 1

RefSeq: NR_135577,

HDAC4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HDAC4-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC4-AS1 Gene

No ASD Table

Relevant External Links for HDAC4-AS1 Gene

GeneLoc Exon Structure for
HDAC4-AS1

Expression for HDAC4-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HDAC4-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDAC4-AS1 Gene

Orthologs for HDAC4-AS1 Gene

Evolution for HDAC4-AS1 Gene

ENSEMBL:
Gene Tree for HDAC4-AS1 (if available)
TreeFam:
Gene Tree for HDAC4-AS1 (if available)

No data available for Orthologs for HDAC4-AS1 Gene

Paralogs for HDAC4-AS1 Gene

No data available for Paralogs for HDAC4-AS1 Gene

Variants for HDAC4-AS1 Gene

Additional dbSNP identifiers (rs#s) for HDAC4-AS1 Gene

Additional Variant Information for HDAC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HDAC4-AS1 Gene

Disorders for HDAC4-AS1 Gene

Additional Disease Information for HDAC4-AS1

No disorders were found for HDAC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HDAC4-AS1 Gene

Publications for HDAC4-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for HDAC4-AS1 Gene

Products for HDAC4-AS1 Gene

Sources for HDAC4-AS1 Gene