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Aliases for HDAC2-AS2 Gene

Subcategory (RNA class) for HDAC2-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HDAC2-AS2 Gene

  • HDAC2 And HS3ST5 Antisense RNA 2 2 3 5

External Ids for HDAC2-AS2 Gene

Summaries for HDAC2-AS2 Gene

GeneCards Summary for HDAC2-AS2 Gene

HDAC2-AS2 (HDAC2 And HS3ST5 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HDAC2-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDAC2-AS2 Gene

Genomics for HDAC2-AS2 Gene

GeneHancer (GH) Regulatory Elements for HDAC2-AS2 Gene

Promoters and enhancers for HDAC2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J113968 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 +0.7 700 4 ZFX SP1 ELF3 MNT SIX5 ZNF148 NKRF POLR2A MLLT1 CEBPG HDAC2 HDAC2-AS2 RPS27AP11 ENSG00000175967
GH06J113969 Promoter 0.8 Ensembl 600.7 -1.6 -1600 0.2 ZNF652 PRDM1 PKNOX1 EBF1 PRDM6 HDAC2-AS2 GC06M113929 HDAC2
GH06J113994 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.3 +28.0 28049 6.4 ELF3 CTCF CEBPG SP7 PPARG PRDM1 ZNF644 RAD21 KAT8 GLIS2 HDAC2 ENSG00000175967 HDAC2-AS2
GH06J113967 Promoter 0.5 Ensembl 0.7 -2.2 -2200 0.2 HDAC2-AS2 GC06M113929 HDAC2
GH06J113978 Enhancer 0.6 Ensembl 0.4 +10.1 10100 3.6 CTCF ZNF341 RAD21 POLR2A SMC3 SMARCA5 IRF4 ZNF654 EBF1 ZNF143 HDAC2 NUDT19P3 HDAC2-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HDAC2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HDAC2-AS2 Gene

Genomic Locations for HDAC2-AS2 Gene
chr6:113,969,701-114,471,705
(GRCh38/hg38)
Size:
502,005 bases
Orientation:
Plus strand

Genomic View for HDAC2-AS2 Gene

Genes around HDAC2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDAC2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC2-AS2 Gene

Proteins for HDAC2-AS2 Gene

Post-translational modifications for HDAC2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC2-AS2 Gene

Domains & Families for HDAC2-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDAC2-AS2 Gene

Function for HDAC2-AS2 Gene

Phenotypes From GWAS Catalog for HDAC2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC2-AS2 Gene

Localization for HDAC2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HDAC2-AS2 Gene

Pathways & Interactions for HDAC2-AS2 Gene

PathCards logo

SuperPathways for HDAC2-AS2 Gene

No Data Available

Interacting Proteins for HDAC2-AS2 Gene

Gene Ontology (GO) - Biological Process for HDAC2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDAC2-AS2 Gene

Drugs & Compounds for HDAC2-AS2 Gene

No Compound Related Data Available

Transcripts for HDAC2-AS2 Gene

mRNA/cDNA for HDAC2-AS2 Gene

(3) Additional mRNA sequences :
(18) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(19) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC2-AS2 Gene

No ASD Table

Relevant External Links for HDAC2-AS2 Gene

GeneLoc Exon Structure for
HDAC2-AS2
ECgene alternative splicing isoforms for
HDAC2-AS2

Expression for HDAC2-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDAC2-AS2 Gene

Orthologs for HDAC2-AS2 Gene

Evolution for HDAC2-AS2 Gene

ENSEMBL:
Gene Tree for HDAC2-AS2 (if available)
TreeFam:
Gene Tree for HDAC2-AS2 (if available)

No data available for Orthologs for HDAC2-AS2 Gene

Paralogs for HDAC2-AS2 Gene

No data available for Paralogs for HDAC2-AS2 Gene

Variants for HDAC2-AS2 Gene

Sequence variations from dbSNP and Humsavar for HDAC2-AS2 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000000786 -- 113,991,597(+) TGTTTTTGTTTTTGTTTT/TGTTTTTGTTTTTGTTTTTGTTTT intron_variant
rs1000001846 -- 114,264,416(+) C/G intron_variant
rs1000013636 -- 114,340,025(+) G/T intron_variant
rs1000020413 -- 114,136,322(+) A/G intron_variant
rs1000024600 -- 114,033,800(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HDAC2-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv6139n100 CNV gain 25217958
esv1963217 CNV deletion 18987734
esv2474357 CNV deletion 19546169
esv2759463 CNV gain 17122850
esv33752 CNV gain 17666407
esv34434 CNV gain 17911159
esv3610425 CNV loss 21293372
esv3610427 CNV gain 21293372
esv3610428 CNV gain 21293372
esv3610429 CNV loss 21293372
esv3610430 CNV loss 21293372
nsv1125421 OTHER inversion 24896259
nsv464024 CNV gain 19166990
nsv476632 CNV novel sequence insertion 20440878
nsv520419 CNV loss 19592680
nsv528128 CNV gain 19592680
nsv604544 CNV gain 21841781
nsv818451 CNV gain 17921354
nsv819824 CNV loss 19587683
nsv965757 CNV duplication 23825009

Additional Variant Information for HDAC2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HDAC2-AS2 Gene

Disorders for HDAC2-AS2 Gene

Additional Disease Information for HDAC2-AS2

No disorders were found for HDAC2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HDAC2-AS2 Gene

Publications for HDAC2-AS2 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 58

Products for HDAC2-AS2 Gene

Sources for HDAC2-AS2 Gene

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