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Aliases for HDAC11-AS1 Gene

Subcategory (RNA class) for HDAC11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HDAC11-AS1 Gene

  • HDAC11 Antisense RNA 1 2 3 5
  • HDAC11 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for HDAC11-AS1 Gene

Previous GeneCards Identifiers for HDAC11-AS1 Gene

  • GC00U933814
  • GC03M013519
  • GC03M013612
  • GC03M013555
  • GC03M013669
  • GC03M014748
  • GC03M013762
  • GC03M013885
  • GC03M013999
  • GC03M014120
  • GC03M014246
  • GC03M014367
  • GC03M014488
  • GC03M014619

Summaries for HDAC11-AS1 Gene

GeneCards Summary for HDAC11-AS1 Gene

HDAC11-AS1 (HDAC11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HDAC11-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDAC11-AS1 Gene

Genomics for HDAC11-AS1 Gene

GeneHancer (GH) Regulatory Elements for HDAC11-AS1 Gene

Promoters and enhancers for HDAC11-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J013477 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 606.5 +0.4 370 3.7 HDGF ZNF652 SP1 CC2D1A ZFX ELF3 POLR2A MLLT1 CEBPG AHR HDAC11-AS1 GC03M014974 HDAC11 FBLN2
GH03J013481 Enhancer 0.5 dbSUPER 600.7 -1.9 -1864 0.4 ATF7 ATF2 PRDM4 PRDM6 HDAC11-AS1 HDAC11 PIR59377
GH03J013001 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +466.9 466940 22.6 SP1 ZFX CC2D1A ZKSCAN8 CBFA2T2 NKRF MLLT1 ZNF121 GTF2F1 CSDE1 IQSEC1 HDAC11 HDAC11-AS1 CAND2 NUP210 RPL32 GC03P013098 GC03P013103 PIR41577 GC03M014944
GH03J013506 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.2 -27.8 -27830 1.9 CBFA2T2 GLIS2 ZNF600 ZIC2 CTBP1 ZNF341 SMARCC2 ZFX RFX1 MAZ HDAC11 HDAC11-AS1 PIR59377
GH03J013351 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.6 +126.9 126879 2.4 CTCF ZNF148 MLLT1 GTF2F1 BACH1 TRIM24 ZNF639 EGR1 SMARCA4 MTA1 NUP210 HDAC11 HDAC11-AS1 IQSEC1 GC03M014974
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HDAC11-AS1 Gene

Genomic Locations for HDAC11-AS1 Gene
chr3:13,476,982-13,480,053
(GRCh38/hg38)
Size:
3,072 bases
Orientation:
Minus strand
chr3:13,518,482-13,521,553
(GRCh37/hg19)
Size:
3,072 bases
Orientation:
Minus strand

Genomic View for HDAC11-AS1 Gene

Genes around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDAC11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC11-AS1 Gene

Proteins for HDAC11-AS1 Gene

Post-translational modifications for HDAC11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC11-AS1 Gene

Domains & Families for HDAC11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDAC11-AS1 Gene

Function for HDAC11-AS1 Gene

Phenotypes From GWAS Catalog for HDAC11-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC11-AS1 Gene

Localization for HDAC11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HDAC11-AS1 Gene

Pathways & Interactions for HDAC11-AS1 Gene

PathCards logo

SuperPathways for HDAC11-AS1 Gene

No Data Available

Interacting Proteins for HDAC11-AS1 Gene

Gene Ontology (GO) - Biological Process for HDAC11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDAC11-AS1 Gene

Drugs & Compounds for HDAC11-AS1 Gene

No Compound Related Data Available

Transcripts for HDAC11-AS1 Gene

mRNA/cDNA for HDAC11-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC11-AS1 Gene

No ASD Table

Relevant External Links for HDAC11-AS1 Gene

GeneLoc Exon Structure for
HDAC11-AS1
ECgene alternative splicing isoforms for
HDAC11-AS1

Expression for HDAC11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HDAC11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HDAC11-AS1 Gene

This gene is overexpressed in Testis (x34.6).
genes like me logo Genes that share expression patterns with HDAC11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDAC11-AS1 Gene

Orthologs for HDAC11-AS1 Gene

Evolution for HDAC11-AS1 Gene

ENSEMBL:
Gene Tree for HDAC11-AS1 (if available)
TreeFam:
Gene Tree for HDAC11-AS1 (if available)

No data available for Orthologs for HDAC11-AS1 Gene

Paralogs for HDAC11-AS1 Gene

No data available for Paralogs for HDAC11-AS1 Gene

Variants for HDAC11-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDAC11-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000621539 -- 13,480,371(-) C/A upstream_transcript_variant
rs1000850855 -- 13,479,953(-) G/A non_coding_transcript_variant
rs1000892704 -- 13,479,840(-) G/A/C/T non_coding_transcript_variant
rs1000942880 -- 13,479,610(-) C/T intron_variant
rs1002087379 -- 13,480,287(-) G/C upstream_transcript_variant

Additional Variant Information for HDAC11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HDAC11-AS1 Gene

Disorders for HDAC11-AS1 Gene

Additional Disease Information for HDAC11-AS1

No disorders were found for HDAC11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HDAC11-AS1 Gene

Publications for HDAC11-AS1 Gene

No publications were found for HDAC11-AS1 Gene.

No data available for External Links for HDAC11-AS1 Gene

Products for HDAC11-AS1 Gene

Sources for HDAC11-AS1 Gene

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