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Aliases for HCP5B Gene

Subcategory (RNA class) for HCP5B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCP5B Gene

  • HLA Complex P5B 2 3 5
  • HLA Complex P5B (Non-Protein Coding) 2 3
  • HLA Complex P5 Pseudogene 10 2 3
  • P5-1 Pseudogene 3
  • AL645929.2 5
  • HCP5P10 3
  • P5-10 3
  • P5.9 3

External Ids for HCP5B Gene

Previous HGNC Symbols for HCP5B Gene

  • HCP5P10

Previous GeneCards Identifiers for HCP5B Gene

  • GC06P029885
  • GC06P8T1161
  • GC06U902866
  • GC06M030033
  • GC06M030447
  • GC06M030057
  • GC06M030136
  • GC06M030194
  • GC06M030232
  • GC06M030283
  • GC06M030321
  • GC06M030367
  • GC06M030401

Summaries for HCP5B Gene

GeneCards Summary for HCP5B Gene

HCP5B (HLA Complex P5B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCP5B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCP5B Gene

Genomics for HCP5B Gene

GeneHancer (GH) Regulatory Elements for HCP5B Gene

Promoters and enhancers for HCP5B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029873 Enhancer 0.3 Ensembl 600.7 -0.4 -418 1.6 PRDM1 HCP5B HLA-G HLA-H HLA-A ZFP57 ENSG00000230521 HLA-J HLA-K ENSG00000227766 HCG4
GH06J029877 Enhancer 0.3 Ensembl 0.7 -4.1 -4118 1 ZNF316 HLA-T HLA-A HCP5B ERVK9-12 ENSG00000285799 GC06M029612
GH06J029880 Enhancer 0.3 Ensembl 0.4 -6.9 -6918 1.4 TRIM28 HLA-H HLA-A HLA-U HLA-F ENSG00000285799 ERVK9-12 HCP5B GC06M029612
GH06J029882 Enhancer 0.2 Ensembl 0.4 -8.4 -8418 0.4 HLA-H HLA-U ZNRD1ASP MICE HLA-W ENSG00000285799 ERVK9-12 HCP5B GC06M029612
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCP5B on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCP5B Gene

Genomic Locations for HCP5B Gene
chr6:29,871,895-29,873,783
(GRCh38/hg38)
Size:
1,889 bases
Orientation:
Minus strand

Genomic View for HCP5B Gene

Genes around HCP5B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCP5B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCP5B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCP5B Gene

No data available for DME Specific Peptides for HCP5B Gene

Domains & Families for HCP5B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCP5B Gene

Function for HCP5B Gene

Phenotypes From GWAS Catalog for HCP5B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCP5B Gene

Localization for HCP5B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCP5B gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCP5B Gene

Pathways & Interactions for HCP5B Gene

PathCards logo

SuperPathways for HCP5B Gene

No Data Available

Interacting Proteins for HCP5B Gene

Gene Ontology (GO) - Biological Process for HCP5B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCP5B Gene

Drugs & Compounds for HCP5B Gene

No Compound Related Data Available

Transcripts for HCP5B Gene

mRNA/cDNA for HCP5B Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCP5B Gene

No ASD Table

Relevant External Links for HCP5B Gene

GeneLoc Exon Structure for
HCP5B
ECgene alternative splicing isoforms for
HCP5B

Expression for HCP5B Gene

NURSA nuclear receptor signaling pathways regulating expression of HCP5B Gene:

HCP5B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCP5B Gene

Orthologs for HCP5B Gene

Evolution for HCP5B Gene

ENSEMBL:
Gene Tree for HCP5B (if available)
TreeFam:
Gene Tree for HCP5B (if available)

No data available for Orthologs for HCP5B Gene

Paralogs for HCP5B Gene

No data available for Paralogs for HCP5B Gene

Variants for HCP5B Gene

Sequence variations from dbSNP and Humsavar for HCP5B Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1002706283 -- 29,872,006(-) A/C non_coding_transcript_variant
rs1006516485 -- 29,871,494(-) G/A downstream_transcript_variant
rs1007187937 -- 29,874,008(-) C/A upstream_transcript_variant
rs1009688362 -- 29,872,437(-) T/C non_coding_transcript_variant
rs1010004375 -- 29,873,980(-) A/G upstream_transcript_variant

Additional Variant Information for HCP5B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCP5B

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCP5B Gene

Disorders for HCP5B Gene

Additional Disease Information for HCP5B

No disorders were found for HCP5B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCP5B Gene

Publications for HCP5B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3 58
  3. A 356-Kb sequence of the subtelomeric part of the MHC Class I region. (PMID: 10727083) Hampe A … Galibert F (DNA sequence : the journal of DNA sequencing and mapping 1999) 3 58
  4. Non-homologous recombination within the major histocompatibility complex creates a transcribed hybrid sequence. (PMID: 7894158) Avoustin P … Pontarotti P (Mammalian genome : official journal of the International Mammalian Genome Society 1994) 3 58

Products for HCP5B Gene

Sources for HCP5B Gene

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