Aliases for HCGVIII-2 Gene

Aliases for HCGVIII-2 Gene

  • HCGVIII-2 Pseudogene 3

External Ids for HCGVIII-2 Gene

Previous GeneCards Identifiers for HCGVIII-2 Gene

  • GC06U900303
  • GC06M029909
  • GC06Mc29942
  • GC06Mj29834
  • GC06M029801
  • GC06M029834
  • GC06M030374
  • GC06M030415
  • GC06M030505
  • GC06M030640
  • GC06M029842
  • GC06M029862
  • GC06M030160
  • GC06M030163
  • GC06M030253
  • GC06M030241
  • GC06M030308
  • GC06M030336
  • GC06M030859
  • GC06M031063

Summaries for HCGVIII-2 Gene

GeneCards Summary for HCGVIII-2 Gene

HCGVIII-2 (HCGVIII-2 Pseudogene) is a Pseudogene.

Additional gene information for HCGVIII-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCGVIII-2 Gene

Genomics for HCGVIII-2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCGVIII-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029845 Enhancer 1 Ensembl ENCODE 0.4 -10.4 -10373 0.6 ZNF580 ZNF223 ZNF639 KLF7 ZNF148 ZNF217 FOXA2 CTBP1 CUX1 ZNF843 MDC1 HCG18 HLA-W ZNF311 HLA-H TRIM39 PPP1R10 HLA-A PRR3 HCG4
GH06J029848 Enhancer 1 Ensembl ENCODE 0.4 -13.0 -13041 0.6 ZNF654 CTCF REST DEK TRIM22 THAP11 RAD21 IRF4 RFX5 SMC3 HLA-W HLA-H HLA-A TRIM31-AS1 TRIM31 HLA-F MICF LOC105375010 HCGVIII-2 HLA-G
GH06J029850 Enhancer 0.6 Ensembl 0.4 -15.1 -15073 0.8 YY1 ATF1 ATF2 CREM RAD21 ATF3 ZNF24 CTBP1 CREB1 PKNOX1 HLA-W HLA-H ZFP57 HLA-K HLA-A ENSG00000230521 TRIM31-AS1 TRIM31 POLR1H IFITM4P
GH06J029844 Enhancer 0.3 Ensembl 0.4 -9.7 -9673 0.4 MAFK NANOG HLA-H ENSG00000230521 TRIM31-AS1 TRIM31 HLA-F HLA-J HLA-K HCGVIII-2 MICF HLA-G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCGVIII-2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCGVIII-2 Gene

Latest Assembly
chr6:29,833,588-29,835,128
(GRCh38/hg38)
Size:
1,541 bases
Orientation:
Minus strand

Previous Assembly
chr6:29,801,365-29,802,905
(GRCh37/hg19 by Entrez Gene)
Size:
1,541 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr6(ALT_REF_LOCI_1):1,099,229-1,100,769 (-)
  • chr6(ALT_REF_LOCI_2):1,317,177-1,318,717 (-)
  • chr6(ALT_REF_LOCI_3):1,096,430-1,097,970 (-)
  • chr6(ALT_REF_LOCI_4):1,096,092-1,097,632 (-)
  • chr6(ALT_REF_LOCI_5):1,096,086-1,097,626 (-)
  • chr6(ALT_REF_LOCI_6):1,096,380-1,097,920 (-)
  • chr6(ALT_REF_LOCI_7):1,139,643-1,141,183 (-)

Genomic View for HCGVIII-2 Gene

Genes around HCGVIII-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCGVIII-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCGVIII-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCGVIII-2 Gene

Post-translational modifications for HCGVIII-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCGVIII-2 Gene

Domains & Families for HCGVIII-2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCGVIII-2 Gene

Function for HCGVIII-2 Gene

Phenotypes From GWAS Catalog for HCGVIII-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCGVIII-2 Gene

Localization for HCGVIII-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCGVIII-2 Gene

Pathways & Interactions for HCGVIII-2 Gene

PathCards logo

SuperPathways for HCGVIII-2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCGVIII-2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCGVIII-2 Gene

Drugs & Compounds for HCGVIII-2 Gene

No Compound Related Data Available

Transcripts for HCGVIII-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HCGVIII-2 Gene

No ASD Table

Relevant External Links for HCGVIII-2 Gene

GeneLoc Exon Structure for
HCGVIII-2

No data available for mRNA/cDNA for HCGVIII-2 Gene

Expression for HCGVIII-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCGVIII-2 Gene

Orthologs for HCGVIII-2 Gene

No data available for Orthologs and Evolution for HCGVIII-2 Gene

Paralogs for HCGVIII-2 Gene

No data available for Paralogs for HCGVIII-2 Gene

Variants for HCGVIII-2 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HCGVIII-2 Gene

Disorders for HCGVIII-2 Gene

Additional Disease Information for HCGVIII-2

Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for HCGVIII-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCGVIII-2 Gene

Publications for HCGVIII-2 Gene

  1. Genetic variants in the HLA-G region are associated with Kawasaki disease. (PMID: 18976687) Kim JJ … Lee JK (Human immunology 2008) 3 40
  2. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3

No data available for Mastermind for HCGVIII-2 Gene

Products for HCGVIII-2 Gene

Sources for HCGVIII-2 Gene