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Aliases for HCG9P5 Gene

Aliases for HCG9P5 Gene

  • HLA Complex Group 9 Pseudogene 5 2 3
  • HCGIX-5 Pseudogene 3
  • DJ377H14.6 3
  • HCGIX-5 3

External Ids for HCG9P5 Gene

Previous GeneCards Identifiers for HCG9P5 Gene

  • GC06P029823
  • GC06P029824
  • GC06M029824
  • GC06P029717
  • GC06P029519
  • GC06Pj29711
  • GC06P029804
  • GC06P030025
  • GC06P030177
  • GC06P030052
  • GC06P030093
  • GC06P032176
  • GC06P030338
  • GC06P030483
  • GC06P030685
  • GC06P030847
  • GC06P031012
  • GC06P031169
  • GC06P031341
  • GC06P031587

Summaries for HCG9P5 Gene

GeneCards Summary for HCG9P5 Gene

HCG9P5 (HLA Complex Group 9 Pseudogene 5) is a Pseudogene.

Additional gene information for HCG9P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG9P5 Gene

Genomics for HCG9P5 Gene

GeneHancer (GH) Regulatory Elements for HCG9P5 Gene

Promoters and enhancers for HCG9P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029747 Promoter/Enhancer 1.5 Ensembl ENCODE 600.7 +0.7 746 2.8 SP1 ELF3 ZFX NKRF POLR2A ZNF687 ZSCAN21 FOS TFE3 SP5 MICE ENSG00000227758 ENSG00000199290 GC06P032385 HCG9P5 HLA-F-AS1 RPL23AP1 ENSG00000227766 HLA-A ZNRD1
GH06J029738 Enhancer 0.9 Ensembl ENCODE 0.4 -10.2 -10153 1 ELF3 CC2D1A CTCF RAD21 ARID2 ZNF143 REST ZEB2 TRIM22 ZNF501 HLA-J MICE ENSG00000227766 HLA-A ZNRD1 ZNRD1ASP HCG9P5 HLA-F-AS1 RPL23AP1 HLA-F
GH06J029730 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -17.9 -17854 2.8 ZBED1 POLR2A ZIC2 NFATC1 HLF DACH1 ZFP57 HLA-J MICE HLA-F ENSG00000227766 IFITM4P ZNRD1 HLA-H HCG4 RPL23AP1
GH06J029728 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -19.9 -19853 0.4 NFE2L2 NFE2 MAFG NFATC1 RPL23AP1 HLA-F ENSG00000227766 HCG9P5 HLA-F-AS1 GC06M029612
GH06J029733 Enhancer 0.4 Ensembl 0.4 -13.0 -12953 3 SP7 RUNX3 HLA-J ZFP57 MICE ENSG00000227766 HLA-F ZNRD1 HLA-H RPL23AP1 HCG9P5 HLA-F-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG9P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG9P5 Gene

Genomic Locations for HCG9P5 Gene
chr6:29,748,254-29,748,648
(GRCh38/hg38)
Size:
395 bases
Orientation:
Plus strand
chr6:29,716,031-29,716,425
(GRCh37/hg19)
Size:
395 bases
Orientation:
Plus strand

Genomic View for HCG9P5 Gene

Genes around HCG9P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG9P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG9P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG9P5 Gene

Post-translational modifications for HCG9P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG9P5 Gene

Domains & Families for HCG9P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG9P5 Gene

Function for HCG9P5 Gene

Phenotypes From GWAS Catalog for HCG9P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG9P5 Gene

Localization for HCG9P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG9P5 Gene

Pathways & Interactions for HCG9P5 Gene

PathCards logo

SuperPathways for HCG9P5 Gene

No Data Available

Interacting Proteins for HCG9P5 Gene

Gene Ontology (GO) - Biological Process for HCG9P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG9P5 Gene

Drugs & Compounds for HCG9P5 Gene

No Compound Related Data Available

Transcripts for HCG9P5 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG9P5 Gene

No ASD Table

Relevant External Links for HCG9P5 Gene

GeneLoc Exon Structure for
HCG9P5
ECgene alternative splicing isoforms for
HCG9P5

No data available for mRNA/cDNA for HCG9P5 Gene

Expression for HCG9P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG9P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG9P5 Gene:

HCG9P5
genes like me logo Genes that share expression patterns with HCG9P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG9P5 Gene

Orthologs for HCG9P5 Gene

No data available for Orthologs and Evolution for HCG9P5 Gene

Paralogs for HCG9P5 Gene

No data available for Paralogs for HCG9P5 Gene

Variants for HCG9P5 Gene

Additional Variant Information for HCG9P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG9P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG9P5 Gene

Disorders for HCG9P5 Gene

No disorders were found for HCG9P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG9P5 Gene

Publications for HCG9P5 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 58

Products for HCG9P5 Gene

Sources for HCG9P5 Gene

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