HCG4B Gene (RNA Gene)

HLA Complex Group 4B

GC06M030862
GIFtS:
14
See more...

Aliases for HCG4B Gene

Subcategory (RNA class) for HCG4B Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HCG4B Gene

  • HLA Complex Group 4B 2 3 5
  • HLA Complex Group 4B (Non-Protein Coding) 2 3
  • HLA Complex Group 4 Pseudogene 6 2 3
  • HCGIV-6 Pseudogene 2 3
  • BPG309N1.1 2 3
  • BQB90C11.3 2 3
  • BCX67J3.3 2 3
  • HCGIV-06 2 3
  • HCGIV-6 2 3
  • HCGIV.5 2 3
  • HCG4B 2 5
  • NONHSAG043380.2 91
  • NONHSAG046379.2 91
  • NONHSAG046205.2 91
  • NONHSAG045861.2 91
  • NONHSAG046563.2 91
  • NONHSAG045560.2 91
  • NONHSAG046046.2 91
  • NONHSAG045554.2 91
  • NONHSAG045668.2 91
  • NONHSAG046038.2 91
  • NONHSAG045852.2 91
  • NONHSAG046372.2 91
  • NONHSAG045660.2 91
  • NONHSAG046555.2 91
  • Em:AB023056.16 2
  • HSALNG0049111 164
  • HSALNG0049098 164
  • HSALNG0049095 164
  • HSALNG0141611 164
  • Lnc-RNF39-13 165
  • Lnc-RNF39-4 165
  • HCG4P6 3

External Ids for HCG4B Gene

Previous HGNC Symbols for HCG4B Gene

  • HCG4P6

Previous GeneCards Identifiers for HCG4B Gene

  • GC06M029898
  • GC06M029906
  • GC06M029921
  • GC06M029934
  • GC06M029954
  • GC06M030015
  • GC06M029958
  • GC06M030024
  • GC06M030421
  • GC06M030471
  • GC06M030510
  • GC06M030643
  • GC06M030045
  • GC06M030117
  • GC06M030067
  • GC06M030209
  • GC06M030268
  • GC06M030302
  • GC06M030345
  • GC06M030380

Summaries for HCG4B Gene

GeneCards Summary for HCG4B Gene

HCG4B (HLA Complex Group 4B) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for HCG4B Gene

  • ZNRD1 antisense RNA 1 conserved region 3
  • ZNRD1 antisense RNA 1 conserved region 2
  • ZNRD1 antisense RNA 1 conserved region 1

Additional gene information for HCG4B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HCG4B Gene

Genomics for HCG4B Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HCG4B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG4B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCG4B Gene

Genomic Locations for HCG4B Gene
chr6:29,899,391-30,067,036
(GRCh38/hg38)
Size:
167,646 bases
Orientation:
Minus strand
chr6:29,892,369-29,893,428
(GRCh37/hg19)
Size:
1,060 bases
Orientation:
Minus strand

Genomic View for HCG4B Gene

Genes around HCG4B on UCSC Golden Path with GeneCards custom track
HCG4B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCG4B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for HCG4B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for HCG4B Gene

Domains & Families for HCG4B Gene

Gene Families for HCG4B Gene

HGNC:
genes like me logo Genes that share domains with HCG4B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG4B Gene

Function for HCG4B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HCG4B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4B Gene

Localization for HCG4B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCG4B gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG4B Gene

Pathways & Interactions for HCG4B Gene

PathCards logo

SuperPathways for HCG4B Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG4B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG4B Gene

Drugs & Compounds for HCG4B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HCG4B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG4B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A446_9606 lncRNA 2624 5

HGNC: 22919,

RefSeq: NR_001317,

LncBook: HSALNT0289500,

LNCipedia: lnc-RNF39-13:2,

NONCODE: NONHSAT208947.1,

URS00008B26E4_9606 lncRNA 2259 3

LncBook: HSALNT0103642,

LNCipedia: lnc-RNF39-13:1,

NONCODE: NONHSAT108560.2,

URS00009C0B7F_9606 lncRNA 1293 3

LncBook: HSALNT0103718,

LNCipedia: lnc-RNF39-4:14,

NONCODE: NONHSAT108585.2,

URS00008BADEF_9606 lncRNA 812 3

LncBook: HSALNT0103730,

LNCipedia: lnc-RNF39-4:11,

NONCODE: NONHSAT108591.2,

URS00008BF84C_9606 lncRNA 733 3

LncBook: HSALNT0103729,

LNCipedia: lnc-RNF39-4:13,

NONCODE: NONHSAT108590.2,

HCG4B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCG4B Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4B Gene

No ASD Table

Relevant External Links for HCG4B Gene

GeneLoc Exon Structure for
HCG4B

Expression for HCG4B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG4B Gene

mRNA expression in normal human tissues for HCG4B Gene
mRNA expression by BioGPS for HCG4B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG4B

SOURCE GeneReport for Unigene cluster for HCG4B Gene:

Hs.661198
genes like me logo Genes that share expression patterns with HCG4B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4B Gene

Orthologs for HCG4B Gene

Evolution for HCG4B Gene

ENSEMBL:
Gene Tree for HCG4B (if available)
TreeFam:
Gene Tree for HCG4B (if available)

No data available for Orthologs for HCG4B Gene

Paralogs for HCG4B Gene

No data available for Paralogs for HCG4B Gene

Variants for HCG4B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for HCG4B Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG4B Gene

Variant ID Type Subtype PubMed ID
dgv10342n54 CNV loss 21841781
dgv10344n54 CNV loss 21841781
dgv10346n54 CNV loss 21841781
dgv10347n54 CNV loss 21841781
dgv10348n54 CNV loss 21841781
dgv10352n54 CNV loss 21841781
dgv10353n54 CNV loss 21841781
dgv10359n54 CNV loss 21841781
dgv10360n54 CNV loss 21841781
dgv10361n54 CNV loss 21841781
dgv10362n54 CNV loss 21841781
dgv1086e199 CNV deletion 23128226
dgv1087e199 CNV deletion 23128226
dgv1088e199 CNV deletion 23128226
dgv1089e199 CNV deletion 23128226
dgv116n17 CNV loss 16327808
dgv1728e212 CNV gain 25503493
dgv1729e212 CNV gain 25503493
dgv1731e212 CNV loss 25503493
dgv1733e212 CNV loss 25503493
dgv1734e212 CNV loss 25503493
dgv1735e212 CNV loss 25503493
dgv211e55 CNV loss 17911159
dgv212e55 CNV loss 17911159
dgv220n111 CNV duplication 26073780
dgv221n111 CNV duplication 26073780
dgv3467e59 CNV duplication 20981092
dgv57e213 CNV loss 24956385
dgv5939n100 CNV loss 25217958
dgv7e195 CNV deletion 20811451
dgv992e201 CNV deletion 23290073
dgv993e201 CNV deletion 23290073
esv2589773 CNV loss 19546169
esv25966 CNV gain+loss 19812545
esv2659548 CNV deletion 23128226
esv2665698 CNV deletion 23128226
esv2670487 CNV deletion 23128226
esv2674187 CNV deletion 23128226
esv2731775 CNV deletion 23290073
esv2756697 CNV loss 18971310
esv2756714 CNV loss 18971310
esv2759412 CNV gain+loss 17122850
esv2761013 CNV loss 21179565
esv2763941 CNV gain+loss 21179565
esv3124 CNV loss 18987735
esv32544 CNV gain+loss 17666407
esv3332677 CNV duplication 20981092
esv3369212 CNV duplication 20981092
esv3415023 CNV duplication 20981092
esv3567496 CNV deletion 23714750
esv3567498 CNV deletion 23714750
esv3570849 CNV loss 25503493
esv3608493 CNV loss 21293372
esv3890806 CNV loss 25118596
esv6014 CNV loss 19470904
nsv1029669 CNV loss 25217958
nsv1074389 CNV deletion 25765185
nsv10810 CNV gain+loss 18304495
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv1161354 CNV deletion 26073780
nsv437962 CNV loss 16468122
nsv442976 CNV loss 18776908
nsv462733 CNV loss 19166990
nsv499693 CNV loss 21111241
nsv508398 CNV deletion 20534489
nsv5240 CNV deletion 18451855
nsv601264 CNV loss 21841781
nsv601331 CNV loss 21841781
nsv601394 CNV gain+loss 21841781
nsv601443 CNV loss 21841781
nsv601450 CNV gain 21841781
nsv820564 CNV deletion 20802225
nsv823469 CNV loss 20364138
nsv823470 CNV loss 20364138
nsv965704 CNV duplication 23825009

Additional Variant Information for HCG4B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4B

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG4B Gene

Disorders for HCG4B Gene

Additional Disease Information for HCG4B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HCG4B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG4B Gene

Publications for HCG4B Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3
  2. Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. (PMID: 16702430) Shiina T … Bahram S (Genetics 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for HCG4B gene in Mastermind

Products for HCG4B Gene

Sources for HCG4B Gene