Aliases for HCG27 Gene

Subcategory (RNA class) for HCG27 Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for HCG27 Gene

  • HLA Complex Group 27 2 3 5
  • HLA Complex Group 27 (Non-Protein Coding) 2 3
  • HCG27 2 168
  • BPG299F13.9 BCX101P6.9 BQB115I13.2 3
  • HSALNG0049246 167
  • NONHSAG046247 92
  • NONHSAG043461 92
  • NONHSAG046434 92
  • NONHSAG045916 92
  • NONHSAG045726 92
  • NONHSAG046605 92
  • BPG299F13.9 3
  • BQB115I13.2 3
  • BCX101P6.9 3

External Ids for HCG27 Gene

Additional External Ids for HCG27 Gene

Previous GeneCards Identifiers for HCG27 Gene

  • GC06P031272
  • GC06P031273
  • GC06P031166

Summaries for HCG27 Gene

GeneCards Summary for HCG27 Gene

HCG27 (HLA Complex Group 27) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCG27 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG27 Gene

Genomics for HCG27 Gene

GeneHancer (GH) Regulatory Elements for HCG27 Gene

Promoters and enhancers for HCG27 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HCG27 gene promoter:
  • MyoD
  • Nkx2-5
  • STAT3
  • TBP

Genomic Locations for HCG27 Gene

Genomic Locations for HCG27 Gene
chr6:31,197,760-31,229,080
(GRCh38/hg38)
Size:
31,321 bases
Orientation:
Plus strand
chr6:31,165,537-31,171,745
(GRCh37/hg19)
Size:
6,209 bases
Orientation:
Plus strand

Genomic View for HCG27 Gene

Genes around HCG27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG27 Gene

Post-translational modifications for HCG27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG27 Gene

Domains & Families for HCG27 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG27 Gene

Function for HCG27 Gene

Phenotypes From GWAS Catalog for HCG27 Gene

genes like me logo Genes that share phenotypes with HCG27: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HCG27

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG27 Gene

Localization for HCG27 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCG27 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG27 Gene

Pathways & Interactions for HCG27 Gene

PathCards logo

SuperPathways for HCG27 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HCG27 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG27 Gene

Drugs & Compounds for HCG27 Gene

No Compound Related Data Available

Transcripts for HCG27 Gene

mRNA/cDNA for HCG27 Gene

22 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
18 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
17 NONCODE transcripts :
1 ENA transcripts :
24 LncBook transcripts :
9 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HCG27

Alternative Splicing Database (ASD) splice patterns (SP) for HCG27 Gene

No ASD Table

Relevant External Links for HCG27 Gene

GeneLoc Exon Structure for
HCG27

Expression for HCG27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG27 Gene

mRNA differential expression in normal tissues according to GTEx for HCG27 Gene

This gene is overexpressed in Whole Blood (x26.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG27

SOURCE GeneReport for Unigene cluster for HCG27 Gene:

Hs.659818
genes like me logo Genes that share expression patterns with HCG27: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG27 Gene

Orthologs for HCG27 Gene

Evolution for HCG27 Gene

ENSEMBL:
Gene Tree for HCG27 (if available)
TreeFam:
Gene Tree for HCG27 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for HCG27: view image

No data available for Orthologs for HCG27 Gene

Paralogs for HCG27 Gene

No data available for Paralogs for HCG27 Gene

Variants for HCG27 Gene

Additional dbSNP identifiers (rs#s) for HCG27 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG27 Gene

Variant ID Type Subtype PubMed ID
esv2731791 CNV deletion 23290073
esv2759414 CNV gain+loss 17122850
esv32635 CNV gain+loss 17666407
esv3411275 CNV duplication 20981092
esv3608531 CNV loss 21293372
esv3608532 CNV gain 21293372
esv3608540 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428140 CNV gain+loss 18775914
nsv601264 CNV loss 21841781
nsv601481 CNV loss 21841781

Additional Variant Information for HCG27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG27

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG27 Gene

Disorders for HCG27 Gene

Additional Disease Information for HCG27

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HCG27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG27 Gene

Publications for HCG27 Gene

  1. A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex. (PMID: 22319020) Davies RW … McPherson R (Circulation. Cardiovascular genetics 2012) 3 41 54
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N … Mountain J (PLoS genetics 2010) 3 41 54
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 41 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  5. Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. (PMID: 24925725) Chung SA … International Consortium for Systemic Lupus Erythematosus Genetics (Journal of the American Society of Nephrology : JASN 2014) 3 54

Products for HCG27 Gene

Sources for HCG27 Gene