Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG27 Gene

Subcategory (RNA class) for HCG27 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG27 Gene

  • HLA Complex Group 27 2 3 5
  • HLA Complex Group 27 (Non-Protein Coding) 2 3
  • BPG299F13.9 BCX101P6.9 BQB115I13.2 3
  • BPG299F13.9 3
  • BQB115I13.2 3
  • BCX101P6.9 3

External Ids for HCG27 Gene

Previous GeneCards Identifiers for HCG27 Gene

  • GC06P031272
  • GC06P031273
  • GC06P031166

Summaries for HCG27 Gene

GeneCards Summary for HCG27 Gene

HCG27 (HLA Complex Group 27) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG27 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG27 Gene

Genomics for HCG27 Gene

GeneHancer (GH) Regulatory Elements for HCG27 Gene

Promoters and enhancers for HCG27 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031196 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 600.7 +0.0 41 3.6 ZFX CC2D1A ELF3 CTCF MNT CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 ENSG00000272501 GC06M031194 HCG27 PSORS1C3 POU5F1 PSORS1C2 PRRT1 CCHCR1 HLA-C GNL1
GH06J031269 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 16.3 +73.9 73899 4.7 SP1 NKRF POLR2A ZNF121 ZNF687 ZSCAN21 FOS YY1 SP7 KLF14 HLA-C PIR41455 PSORS1C3 PPT2 TNXB LSM2 PSORS1C2 HCG18 TCF19 HCG27
GH06J031207 Enhancer 1.3 Ensembl ENCODE dbSUPER 18.6 +11.6 11641 4.4 ELF3 CEBPG PPARG SP5 ZNF644 KAT8 HMG20B RXRA CEBPA GATAD2A POU5F1 PSORS1C3 HLA-C ENSG00000272501 HCG27 CCHCR1 HCG22 PSORS1C1 MICA ENSG00000229836
GH06J031352 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.2 +158.3 158278 7.3 SP1 POLR2A ZNF687 FOS ZBTB7A SP7 RELA CREM PRDM1 MLLT1 HLA-B ENSG00000271581 GC06M031447 GC06M031448 PIR40863 MIR6891 HLA-C DDX39B MICA LY6G5B
GH06J030826 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -368.5 -368479 5.5 ZNF652 ZFX ELF3 CC2D1A CTCF ZSCAN21 BACH1 MAFK TFE3 TRIM24 LINC00243 DDR1 VARS2 IER3 HLA-C DDR1-DT FLOT1 MUCL3 HCG21 HCG27
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HCG27 gene promoter:
  • MyoD
  • Nkx2-5
  • STAT3
  • TBP

Genomic Locations for HCG27 Gene

Genomic Locations for HCG27 Gene
chr6:31,197,760-31,203,968
(GRCh38/hg38)
Size:
6,209 bases
Orientation:
Plus strand
chr6:31,165,537-31,171,745
(GRCh37/hg19)
Size:
6,209 bases
Orientation:
Plus strand

Genomic View for HCG27 Gene

Genes around HCG27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG27 Gene

No data available for DME Specific Peptides for HCG27 Gene

Domains & Families for HCG27 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG27 Gene

Function for HCG27 Gene

Phenotypes From GWAS Catalog for HCG27 Gene

genes like me logo Genes that share phenotypes with HCG27: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HCG27

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG27 Gene

Localization for HCG27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG27 Gene

Pathways & Interactions for HCG27 Gene

PathCards logo

SuperPathways for HCG27 Gene

No Data Available

Interacting Proteins for HCG27 Gene

Gene Ontology (GO) - Biological Process for HCG27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG27 Gene

Drugs & Compounds for HCG27 Gene

No Compound Related Data Available

Transcripts for HCG27 Gene

mRNA/cDNA for HCG27 Gene

(6) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNA Central transcripts :

Unigene Clusters for HCG27 Gene

HLA complex group 27 (non-protein coding):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HCG27

Alternative Splicing Database (ASD) splice patterns (SP) for HCG27 Gene

No ASD Table

Relevant External Links for HCG27 Gene

GeneLoc Exon Structure for
HCG27
ECgene alternative splicing isoforms for
HCG27

Expression for HCG27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG27 Gene

mRNA differential expression in normal tissues according to GTEx for HCG27 Gene

This gene is overexpressed in Whole Blood (x26.9).

NURSA nuclear receptor signaling pathways regulating expression of HCG27 Gene:

HCG27

SOURCE GeneReport for Unigene cluster for HCG27 Gene:

Hs.659818
genes like me logo Genes that share expression patterns with HCG27: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG27 Gene

Orthologs for HCG27 Gene

Evolution for HCG27 Gene

ENSEMBL:
Gene Tree for HCG27 (if available)
TreeFam:
Gene Tree for HCG27 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for HCG27: view image

No data available for Orthologs for HCG27 Gene

Paralogs for HCG27 Gene

No data available for Paralogs for HCG27 Gene

Variants for HCG27 Gene

Sequence variations from dbSNP and Humsavar for HCG27 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000131027 -- 31,200,163(+) C/T intron_variant
rs1001026457 -- 31,198,421(+) T/C intron_variant
rs1001481429 -- 31,199,379(+) C/G intron_variant
rs1001596553 -- 31,196,604(+) G/A upstream_transcript_variant
rs1001689921 -- 31,200,932(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG27 Gene

Variant ID Type Subtype PubMed ID
esv2731791 CNV deletion 23290073
esv2759414 CNV gain+loss 17122850
esv32635 CNV gain+loss 17666407
esv3411275 CNV duplication 20981092
esv3608531 CNV loss 21293372
esv3608532 CNV gain 21293372
esv3608540 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428140 CNV gain+loss 18775914
nsv601264 CNV loss 21841781
nsv601481 CNV loss 21841781

Additional Variant Information for HCG27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG27

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG27 Gene

Disorders for HCG27 Gene

Additional Disease Information for HCG27

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HCG27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG27 Gene

Publications for HCG27 Gene

  1. A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex. (PMID: 22319020) Davies RW … McPherson R (Circulation. Cardiovascular genetics 2012) 3 45 58
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N … Mountain J (PLoS genetics 2010) 3 45 58
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 45 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  5. Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. (PMID: 24925725) Chung SA … International Consortium for Systemic Lupus Erythematosus Genetics (Journal of the American Society of Nephrology : JASN 2014) 3 58

Products for HCG27 Gene

Sources for HCG27 Gene

Content
Loading form....