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HCG26 Gene(RNA Gene)

HLA Complex Group 26 (Non-Protein Coding)

GCID:
GC06P031472
GIFtS:
16
Genes Participants
UDN Logo

Aliases for HCG26 Gene

Subcategory (RNA class) for HCG26 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for HCG26 Gene

  • HLA Complex Group 26 (Non-Protein Coding) 2 3
  • MHC Class I MRNA Fragment 3.8-1 3
  • Non-Protein Coding RNA 191 2
  • HLA Complex Group 26 2
  • BPG181B23.4 3
  • NCRNA00191 3
  • BCX205D4.4 3
  • 3.8-1 3

External Ids for HCG26 Gene

ORGUL Members for HCG26 Gene

Previous GeneCards Identifiers for HCG26 Gene

  • GC00U915702
  • GC06U900756
  • GC06P031547
  • GC06P031548
  • GC06P031439
  • GC06P031226

Summaries for HCG26 Gene

GeneCards Summary for HCG26 Gene

HCG26 (HLA Complex Group 26 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCG26 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG26 Gene

Genomics for HCG26 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for HCG26 Gene

Promoters and enhancers for HCG26 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06I031474 Enhancer 0.7 ENCODE 0.8 +3.5 3452 0.9 CTCF ZNF316 POLR2A ZNF143 FOS ZNF600 NFE2L2 SMARCC1 NRF1 CEBPB C4A PPIAP9 RPL15P4 MCCD1 SNORD117 DDX39B HLA-C MICA POU5F1 MICB
GH06I031466 Enhancer 0.5 dbSUPER 0.8 -3.6 -3606 3.1 STAT1 KLF1 RFX1 POLR2A SMAD5 ZNF341 BMI1 GC06M031449 HLA-C MICB C4B PPIAP9 MCCD1 RPL15P4 DDX39B SNORD117 PSORS1C2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HCG26 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HCG26 gene promoter:

Genomic Locations for HCG26 Gene

Genomic Locations for HCG26 Gene
chr6:31,471,229-31,472,408
(GRCh38/hg38)
Size:
1,180 bases
Orientation:
Plus strand
chr6:31,439,006-31,440,185
(GRCh37/hg19)

Genomic View for HCG26 Gene

Genes around HCG26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG26 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HCG26 Gene

Proteins for HCG26 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HCG26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG26 Gene

Domains & Families for HCG26 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG26 Gene

Function for HCG26 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HCG26 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG26 Gene

Localization for HCG26 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCG26 gene
Compartment Confidence
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG26 Gene

Pathways & Interactions for HCG26 Gene

SuperPathways for HCG26 Gene

PathCards logo More details on SuperPathways for HCG26
No Data Available

Interacting Proteins for HCG26 Gene

Gene Ontology (GO) - Biological Process for HCG26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG26 Gene

Drugs & Compounds for HCG26 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HCG26 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HCG26 Gene

(2) Additional mRNA sequences :

Unigene Clusters for HCG26 Gene

HLA complex group 26 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG26 Gene

No ASD Table

Relevant External Links for HCG26 Gene

GeneLoc Exon Structure for
HCG26
ECgene alternative splicing isoforms for
HCG26

Expression for HCG26 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG26 Gene

mRNA expression in normal human tissues for HCG26 Gene
mRNA expression by BioGPS for HCG26 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG26 Gene:

HCG26

SOURCE GeneReport for Unigene cluster for HCG26 Gene:

Hs.132807
genes like me logo Genes that share expression patterns with HCG26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG26 Gene

Orthologs for HCG26 Gene

No data available for Orthologs and Evolution for HCG26 Gene

Paralogs for HCG26 Gene

No data available for Paralogs for HCG26 Gene

Variants for HCG26 Gene

Sequence variations from dbSNP and Humsavar for HCG26 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000312727 -- 31,471,885(+) G/A/T non_coding_transcript_variant
rs1002950551 -- 31,469,929(+) G/A upstream_transcript_variant
rs1003093176 -- 31,470,339(+) C/A upstream_transcript_variant
rs1004036056 -- 31,470,350(+) G/A/T upstream_transcript_variant
rs1004104682 -- 31,470,719(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG26 Gene

Variant ID Type Subtype PubMed ID
esv2763959 CNV gain+loss 21179565
esv29968 CNV gain 17803354
esv3160 OTHER sequence alteration 18987735
esv3340082 CNV insertion 20981092
esv3343152 CNV insertion 20981092
esv33563 CNV gain+loss 17666407
esv34063 CNV loss 18971310
esv3411275 CNV duplication 20981092
esv34118 CNV loss 18971310
esv3576141 CNV gain 25503493
esv3608563 CNV loss 21293372
esv3890819 CNV loss 25118596
nsv1022499 CNV gain 25217958
nsv1030802 CNV gain 25217958
nsv1073969 CNV deletion 25765185
nsv10820 CNV gain+loss 18304495
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161369 CNV deletion 26073780
nsv428140 CNV gain+loss 18775914
nsv435829 CNV deletion 17901297
nsv441990 CNV loss 18776908
nsv462854 CNV gain 19166990
nsv511312 CNV loss 21212237
nsv511868 CNV loss 21212237
nsv513736 CNV insertion 21212237
nsv517441 CNV gain+loss 19592680
nsv5246 CNV deletion 18451855
nsv601880 CNV gain+loss 21841781
nsv601935 CNV loss 21841781
nsv601936 CNV loss 21841781
nsv818409 CNV loss 17921354
esv2762584 CNV loss 21179565
esv2759414 CNV gain+loss 17122850
esv2752123 CNV gain 17911159
esv2731822 CNV deletion 23290073
esv26480 CNV loss 19812545
esv2432528 CNV deletion 19546169
esv1671758 CNV insertion 17803354
dgv995e201 CNV deletion 23290073
dgv747n27 CNV loss 19166990
dgv5944n100 CNV loss 25217958
dgv5943n100 CNV gain+loss 25217958
dgv5942n100 CNV loss 25217958
dgv215e55 CNV loss 17911159
dgv214e55 CNV gain 17911159
dgv213e55 CNV gain 17911159
dgv1752e212 CNV loss 25503493
dgv1751e212 CNV gain 25503493
dgv1098e199 CNV deletion 23128226
dgv10458n54 CNV loss 21841781
dgv10454n54 CNV gain 21841781
dgv10453n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10403n54 CNV loss 21841781
dgv10393n54 CNV loss 21841781
nsv823497 CNV loss 20364138
nsv970363 CNV duplication 23825009

Additional Variant Information for HCG26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG26 Gene

Disorders for HCG26 Gene

Additional Disease Information for HCG26

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HCG26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG26 Gene

Publications for HCG26 Gene

  1. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K … Salomaa V (Circulation. Cardiovascular genetics 2012) 3 44 58
  2. Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. (PMID: 24837172) Juyal G … Thelma BK (Gut 2015) 3 58
  3. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3 58
  4. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y … Tanaka T (Nature genetics 2012) 3 58
  5. Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups. (PMID: 22286212) Urayama KY … McKay JD (Journal of the National Cancer Institute 2012) 44 58

Products for HCG26 Gene

Sources for HCG26 Gene

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