Aliases for HCG26 Gene

Subcategory (RNA class) for HCG26 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for HCG26 Gene

  • HLA Complex Group 26 2 3
  • HLA Complex Group 26 (Non-Protein Coding) 2 3
  • BPG181B23.4 2 3
  • NCRNA00191 2 3
  • BCX205D4.4 2 3
  • HCG26 2 165
  • MHC Class I MRNA Fragment 3.8-1 3
  • Non-Protein Coding RNA 191 2
  • NONHSAG043479.2 91
  • NONHSAG045739.2 91
  • NONHSAG046446.2 91
  • NONHSAG046618.2 91
  • NONHSAG046619.2 91
  • NONHSAG045923.2 91
  • NONHSAG046255.2 91
  • NONHSAG045740.2 91
  • HSALNG0049271 164
  • 3.8-1 3
  • HCP5 165

External Ids for HCG26 Gene

Additional External Ids for HCG26 Gene

Previous GeneCards Identifiers for HCG26 Gene

  • GC00U915702
  • GC06U900756
  • GC06P031547
  • GC06P031548
  • GC06P031439
  • GC06P031226
  • GC06P032305
  • GC06P032493
  • GC06P032598
  • GC06P033389
  • GC06P031472
  • GC06P032094
  • GC06P032101

Summaries for HCG26 Gene

GeneCards Summary for HCG26 Gene

HCG26 (HLA Complex Group 26) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCG26 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG26 Gene

Genomics for HCG26 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCG26 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031474 Enhancer 0.6 ENCODE 0.7 +3.5 3452 0.9 CTCF ZNF600 MNT SMARCC1 CEBPB ZNF316 SMARCB1 JUND MAFG EP300 C4A PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B HLA-C MICA POU5F1 MICB
GH06J031491 Enhancer 0.8 ENCODE 0.4 +20.9 20880 0.2 CTCF IKZF1 ZNF692 PRDM1 ZNF143 TRIM22 HDAC1 PKNOX1 CBX3 KLF7 MICB SNORD117 DDX39B PPIAP9 MCCD1 RPL15P4 MICB-DT MN298114-200 HCG26 MICA
GH06J031475 Enhancer 0.3 Ensembl 0.7 +4.7 4672 0.2 ZNF766 PRDM10 PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B MICA HCG26 MICB MN298114-200 HCP5
GH06J031476 Enhancer 0.5 Ensembl 0.4 +5.9 5872 1 IKZF2 EED RUNX3 CTCF SPI1 IKZF1 MICB PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B HLA-C MICA HCG26 MN298114-200
GH06J031485 Enhancer 0.4 Ensembl 0.4 +14.3 14272 0.6 CEBPB ZNF316 ATF4 MICB ENSG00000272221 ATP6V1G2 PPIAP9 MCCD1 RPL15P4 PSORS1C1 SNORD117 DDX39B DDX39B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG26 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the HCG26 gene promoter:
  • AhR
  • AREB6
  • Arnt
  • c-Rel
  • Egr-1
  • Egr-4
  • Ik-1
  • Pax-2
  • Pax-2a

Genomic Locations for HCG26 Gene

Genomic Locations for HCG26 Gene
chr6:31,471,229-31,472,408
(GRCh38/hg38)
Size:
1,180 bases
Orientation:
Plus strand
chr6:31,439,006-31,440,185
(GRCh37/hg19)
Size:
1,180 bases
Orientation:
Plus strand

Genomic View for HCG26 Gene

Genes around HCG26 on UCSC Golden Path with GeneCards custom track
HCG26 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCG26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG26 Gene

No data available for DME Specific Peptides for HCG26 Gene

Domains & Families for HCG26 Gene

Gene Families for HCG26 Gene

genes like me logo Genes that share domains with HCG26: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG26 Gene

Function for HCG26 Gene

Phenotypes From GWAS Catalog for HCG26 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HCG26 Gene

Localization for HCG26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG26 Gene

Pathways & Interactions for HCG26 Gene

PathCards logo

SuperPathways for HCG26 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG26 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG26 Gene

Drugs & Compounds for HCG26 Gene

No Compound Related Data Available

Transcripts for HCG26 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG26 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B50E_9606 lncRNA 1180 4

HGNC: 29671,

RefSeq: NR_002812,

LNCipedia: HCG26:2,

NONCODE: NONHSAT108776.2,

URS00008C1CF9_9606 lncRNA 461 3

Ensembl: ENST00000447631 (view in UCSC) ,

LncBook: HSALNT0104356,

NONCODE: NONHSAT118399.2,

URS00008C1257_9606 lncRNA 2544 2

Ensembl: ENST00000419355 (view in UCSC) ,

NONCODE: NONHSAT116708.2,

URS00008C1A0E_9606 lncRNA 2544 2

Ensembl: ENST00000423496 (view in UCSC) ,

NONCODE: NONHSAT118398.2,

URS00008C2545_9606 lncRNA 2424 2

Ensembl: ENST00000438873 (view in UCSC) ,

NONCODE: NONHSAT116709.2,

HCG26 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCG26 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG26 Gene

No ASD Table

Relevant External Links for HCG26 Gene

GeneLoc Exon Structure for
HCG26

Expression for HCG26 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG26 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG26

SOURCE GeneReport for Unigene cluster for HCG26 Gene:

Hs.132807
genes like me logo Genes that share expression patterns with HCG26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG26 Gene

Orthologs for HCG26 Gene

No data available for Orthologs and Evolution for HCG26 Gene

Paralogs for HCG26 Gene

No data available for Paralogs for HCG26 Gene

Variants for HCG26 Gene

Additional dbSNP identifiers (rs#s) for HCG26 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG26 Gene

Variant ID Type Subtype PubMed ID
dgv10393n54 CNV loss 21841781
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10453n54 CNV loss 21841781
dgv10454n54 CNV gain 21841781
dgv10458n54 CNV loss 21841781
dgv1098e199 CNV deletion 23128226
dgv1751e212 CNV gain 25503493
dgv1752e212 CNV loss 25503493
dgv213e55 CNV gain 17911159
dgv214e55 CNV gain 17911159
dgv215e55 CNV loss 17911159
dgv5942n100 CNV loss 25217958
dgv5943n100 CNV gain+loss 25217958
dgv5944n100 CNV loss 25217958
dgv747n27 CNV loss 19166990
dgv995e201 CNV deletion 23290073
esv1671758 CNV insertion 17803354
esv2432528 CNV deletion 19546169
esv26480 CNV loss 19812545
esv2731822 CNV deletion 23290073
esv2752123 CNV gain 17911159
esv2759414 CNV gain+loss 17122850
esv2762584 CNV loss 21179565
esv2763959 CNV gain+loss 21179565
esv29968 CNV gain 17803354
esv3160 OTHER sequence alteration 18987735
esv3340082 CNV insertion 20981092
esv3343152 CNV insertion 20981092
esv33563 CNV gain+loss 17666407
esv34063 CNV loss 18971310
esv3411275 CNV duplication 20981092
esv34118 CNV loss 18971310
esv3576141 CNV gain 25503493
esv3608563 CNV loss 21293372
esv3890819 CNV loss 25118596
nsv1022499 CNV gain 25217958
nsv1030802 CNV gain 25217958
nsv1073969 CNV deletion 25765185
nsv10820 CNV gain+loss 18304495
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161369 CNV deletion 26073780
nsv428140 CNV gain+loss 18775914
nsv435829 CNV deletion 17901297
nsv441990 CNV loss 18776908
nsv462854 CNV gain 19166990
nsv511312 CNV loss 21212237
nsv511868 CNV loss 21212237
nsv513736 CNV insertion 21212237
nsv517441 CNV gain+loss 19592680
nsv5246 CNV deletion 18451855
nsv601880 CNV gain+loss 21841781
nsv601935 CNV loss 21841781
nsv601936 CNV loss 21841781
nsv818409 CNV loss 17921354
nsv823497 CNV loss 20364138
nsv970363 CNV duplication 23825009

Additional Variant Information for HCG26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG26

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG26 Gene

Disorders for HCG26 Gene

Additional Disease Information for HCG26

No disorders were found for HCG26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG26 Gene

Publications for HCG26 Gene

  1. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K … Salomaa V (Circulation. Cardiovascular genetics 2012) 3 41
  2. Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. (PMID: 24837172) Juyal G … Thelma BK (Gut 2015) 3
  3. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3
  4. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y … Tanaka T (Nature genetics 2012) 3
  5. Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups. (PMID: 22286212) Urayama KY … McKay JD (Journal of the National Cancer Institute 2012) 41

Products for HCG26 Gene

Sources for HCG26 Gene