Aliases for HCG26 Gene
Subcategory (RNA class) for HCG26 Gene
lncRNA
Quality Score for this RNA gene is
13
Aliases for HCG26 Gene
ORGUL Members for HCG26 Gene
Previous GeneCards Identifiers for HCG26 Gene
- GC00U915702
- GC06U900756
- GC06P031547
- GC06P031548
- GC06P031439
- GC06P031226
- GC06P032305
- GC06P031472
- GC06P032094
- GC06P032101
Summaries for HCG26 Gene
GeneCards Summary for HCG26 Gene
HCG26 (HLA Complex Group 26) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for HCG26 Gene
- Monarch Initiative
- Search for HCG26 at DataMed
- Search for HCG26 at HumanCyc
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG26 Gene
Genomics for HCG26 Gene
GeneHancer (GH) Regulatory Elements for HCG26 Gene
Promoters and enhancers for HCG26 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J031474 | Enhancer | 0.7 | ENCODE | 0.7 | +3.5 | 3452 | 0.9 | MNT ZNF600 CTCF SMARCC1 ZNF316 CEBPB SMARCB1 JUND EP300 MAFG | C4A PPIAP9 RPL15P4 MCCD1 SNORD117 DDX39B HLA-C MICA POU5F1 MICB | |
| GH06J031466 | Enhancer | 0.5 | dbSUPER | 0.7 | -3.6 | -3606 | 3.1 | POLR2A RFX1 SMAD5 ZNF341 BMI1 STAT1 KLF1 | GC06M031449 HLA-C MICB C4B PPIAP9 RPL15P4 MCCD1 DDX39B SNORD117 PSORS1C2 | |
| GH06J031476 | Enhancer | 0.5 | Ensembl | 0.4 | +5.6 | 5572 | 0.8 | IKZF1 IKZF2 EED RUNX3 CTCF | MICB PPIAP9 RPL15P4 MCCD1 SNORD117 DDX39B HLA-C MICA GC06M031438 HCG26 | |
| GH06J031485 | Enhancer | 0.3 | Ensembl | 0.4 | +14.3 | 14272 | 0.6 | ZNF316 | GC06M031438 MICB ENSG00000272221 ATP6V1G2 PPIAP9 MCCD1 RPL15P4 PSORS1C1 SNORD117 DDX39B | |
| GH06J031477 | Enhancer | 0.2 | Ensembl | 0.4 | +6.5 | 6472 | 0.2 | MICB PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B HCG27 POU5F1 GC06M031438 HCG26 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HCG26 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the HCG26 gene promoter:
-
- AhR
- AREB6
- Arnt
- c-Rel
- Egr-1
- Egr-4
- Ik-1
- Pax-2
- Pax-2a
Genomic Locations for HCG26 Gene
Genomic Locations for HCG26 Gene
- chr6:31,471,229-31,472,408
- (GRCh38/hg38)
- Size:
- 1,180 bases
- Orientation:
- Plus strand
- chr6:31,439,006-31,440,185
- (GRCh37/hg19)
- Size:
- 1,180 bases
- Orientation:
- Plus strand
Genomic View for HCG26 Gene
Genes around HCG26 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p21.3 by HGNC
- 6p21.33 by Entrez Gene
HCG26 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HCG26 Gene
Proteins for HCG26 Gene
Post-translational modifications for HCG26 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HCG26
- Origene Custom Protein Services for HCG26
No data available for DME Specific Peptides for HCG26 Gene
Domains & Families for HCG26 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG26 Gene
Function for HCG26 Gene
Phenotypes From GWAS Catalog for HCG26 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for HCG26
-
CRISPR Products
- Browse CRISPR knockouts for HCG26
- Applied Biological Materials (abm): CRISPR Clones for HCG26 - Now 50% OFF >
- * HCG26 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * HCG26 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for HCG26 - Now 50% OFF >
- * HCG26 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * HCG26 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG26 Gene
Localization for HCG26 Gene
| Compartment | Confidence |
|---|---|
| lysosome | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG26 Gene
Transcripts for HCG26 Gene
mRNA/cDNA for HCG26 Gene
- (1) Additional mRNA sequences :
- (1) RNA Central transcripts :
Unigene Clusters for HCG26 Gene
CRISPR Products
- Browse CRISPR knockouts for HCG26
- Applied Biological Materials (abm): CRISPR Clones for HCG26 - Now 50% OFF >
- * HCG26 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * HCG26 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for HCG26 - Now 50% OFF >
- * HCG26 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * HCG26 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for HCG26 Gene
NURSA nuclear receptor signaling pathways regulating expression of HCG26 Gene:
HCG26SOURCE GeneReport for Unigene cluster for HCG26 Gene:
Hs.132807
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG26 Gene
Orthologs for HCG26 Gene
No data available for Orthologs and Evolution for HCG26 Gene
Paralogs for HCG26 Gene
No data available for Paralogs for HCG26 Gene
Variants for HCG26 Gene
| SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000312727 | -- | 31,471,885(+) | G/A/T | non_coding_transcript_variant | |
| rs1002950551 | -- | 31,469,929(+) | G/A | upstream_transcript_variant | |
| rs1003093176 | -- | 31,470,339(+) | C/A | upstream_transcript_variant | |
| rs1004036056 | -- | 31,470,350(+) | G/A/T | upstream_transcript_variant | |
| rs1004104682 | -- | 31,470,719(+) | T/C | upstream_transcript_variant |
Additional Variant Information for HCG26 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HCG26
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG26 Gene
Disorders for HCG26 Gene
Additional Disease Information for HCG26
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for HCG26 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG26 Gene
Publications for HCG26 Gene
- Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K … Salomaa V (Circulation. Cardiovascular genetics 2012) 3 45 58
- Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. (PMID: 24837172) Juyal G … Thelma BK (Gut 2015) 3 58
- Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3 58
- Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y … Tanaka T (Nature genetics 2012) 3 58
- Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups. (PMID: 22286212) Urayama KY … McKay JD (Journal of the National Cancer Institute 2012) 45 58
ExternalLinks
Products for HCG26 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HCG26
- Origene Custom Protein Services for HCG26
- Browse OriGene Inhibitory RNA Products For HCG26
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HCG26
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HCG26
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for HCG26
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for HCG26
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for HCG26
- Search GeneCopoeia for miRNA 3'UTR Target clone products for HCG26
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for HCG26
Sources for HCG26 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind