Aliases for HCG25 Gene

Data sources for HCG25 Gene:

Subcategory (RNA class) for HCG25 Gene

lncRNA

Aliases for HCG25 Gene

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033321
  • GC06P033325
  • GC06P033327
  • GC06P033523
  • GC06P033260
  • GC06P033264
  • GC06P033266
  • GC06P033268
  • GC06P033296
  • GC06P033301
  • GC06P033311
  • GC06P033317
  • GC06P047373

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCG25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCG25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033247 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 250.7 +1.3 1269 3.3 CHD2 TBP ZBTB10 SP1 MXD4 NR2C1 MNT DEK IKZF1 SMAD5 HCG25 lnc-VPS52-1 DAXX TAPBP RGL2 HSD17B8 VPS52 RING1
GH06J032965 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 114.8 -277.6 -277639 10.4 ZSCAN16 CHD2 ZBTB10 BCL11A MXD4 CEBPA NR2C1 MNT IKZF1 BRCA1 BRD2 HLA-DMA ENSG00000223837 NONHSAG045804.2 LEMD2 VPS52 RXRB ATF6B DAXX RING1
GH06J033270 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 55.3 +26.7 26650 8.7 ZSCAN16 CHD2 SP1 ZBTB10 MXD4 CEBPA SIX5 NR2C1 MNT IKZF1 VPS52 RPS18 NONHSAG046700.2 piR-32331-006 BRD2 LEMD2 RXRB DAXX RING1 WDR46
GH06J033414 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 50.1 +169.7 169650 6.9 TBP ZBTB10 MXD4 SP1 FEZF1 SIX5 NR2C1 MNT IKZF1 SMAD5 SYNGAP1 CUTA lnc-DAXX-2 BRD2 LEMD2 DAXX VPS52 WDR46 RXRB HCG25
GH06J033203 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 51.7 -41.8 -41762 6.1 CHD2 TBP ZBTB10 SP1 MXD4 NR2C1 MNT DEK IKZF1 SMAD5 RING1 HSD17B8 HSALNG0049497 MIR219A1 BRD2 LEMD2 VPS52 RXRB HCG25 WDR46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG25 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCG25 Gene

Latest Assembly
chr6:33,248,308-33,255,745
(GRCh38/hg38)
Size:
7,438 bases
Orientation:
Plus strand

Previous Assembly
chr6:33,217,313-33,222,667
(GRCh37/hg19 by Entrez Gene)
Size:
5,355 bases
Orientation:
Plus strand

chr6:33,217,311-33,222,766
(GRCh37/hg19 by Ensembl)
Size:
5,456 bases
Orientation:
Plus strand

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track
HCG25 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

Post-translational modifications for HCG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

Gene Families for HCG25 Gene

genes like me logo Genes that share domains with HCG25: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Phenotypes From GWAS Catalog for HCG25 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

PathCards logo

SuperPathways for HCG25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG25 Gene

Drugs & Compounds for HCG25 Gene

No Compound Related Data Available

Transcripts for HCG25 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG25 Gene

HCG25 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25

No data available for mRNA/cDNA for HCG25 Gene

Expression for HCG25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG25 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for HCG25 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
dgv10609n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830634 CNV loss 17160897

Additional Variant Information for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Additional Disease Information for HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene