Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG25 Gene

Subcategory (RNA class) for HCG25 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG25 Gene

  • HLA Complex Group 25 2 3 5
  • HLA Complex Group 25 (Non-Protein Coding) 2 3
  • DJ1033B10.16 3

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033321
  • GC06P033260
  • GC06P033264
  • GC06P033266
  • GC06P033268
  • GC06P033296
  • GC06P033301
  • GC06P033311
  • GC06P033317

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

GeneHancer (GH) Regulatory Elements for HCG25 Gene

Promoters and enhancers for HCG25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033247 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 610.4 0.0 -27 3.4 HDGF ZFX SP1 ELF3 CC2D1A CTCF NKRF POLR2A MLLT1 RERE HCG25 DAXX TAPBP RGL2 HSD17B8 LOC105375022 VPS52
GH06J032965 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 109.2 -278.7 -278709 10.7 HDGF MTA3 ZNF652 CC2D1A ZFX ELF3 CTCF MNT CBFA2T2 NKRF BRD2 HLA-DMA ENSG00000223837 VPS52 LEMD2 RXRB ATF6B HCG25 RING1 DAXX
GH06J034233 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 54.7 +992.7 992722 17.1 MTA3 SP1 ZFX CTCF ELF3 CBFA2T2 ZNF148 NKRF POLR2A MLLT1 SMIM29 MIR6835 HMGA1 VPS52 LEMD2 TAF11 HCG25 WDR46 DAXX RPS10
GH06J033270 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 49.7 +25.4 25424 8.7 HDGF MTA3 SP1 ZFX ELF3 ZKSCAN8 SIX5 ZNF148 NKRF POLR2A VPS52 RPS18 PIR43330 BRD2 LEMD2 RXRB DAXX RING1 WDR46 RGL2
GH06J033203 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 51.4 -43.0 -42988 6.1 SP1 ZFX CC2D1A ELF3 ZNF148 NKRF POLR2A MLLT1 CEBPG GTF2F1 RING1 HSD17B8 MIR219A1 BRD2 LEMD2 VPS52 RXRB HCG25 DAXX WDR46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG25 Gene

Genomic Locations for HCG25 Gene
chr6:33,249,534-33,254,989
(GRCh38/hg38)
Size:
5,456 bases
Orientation:
Plus strand
chr6:33,217,311-33,222,766
(GRCh37/hg19)
Size:
5,456 bases
Orientation:
Plus strand

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Phenotypes From GWAS Catalog for HCG25 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

PathCards logo

SuperPathways for HCG25 Gene

No Data Available

Interacting Proteins for HCG25 Gene

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG25 Gene

Drugs & Compounds for HCG25 Gene

No Compound Related Data Available

Transcripts for HCG25 Gene

mRNA/cDNA for HCG25 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

Unigene Clusters for HCG25 Gene

HLA complex group 25 (non-protein coding):
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25
ECgene alternative splicing isoforms for
HCG25

Expression for HCG25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG25 Gene:

HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

Sequence variations from dbSNP and Humsavar for HCG25 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000779401 -- 33,250,292(+) A/G intron_variant
rs1000816719 -- 33,249,534(+) A/AA upstream_transcript_variant
rs1001982582 -- 33,249,246(+) G/A upstream_transcript_variant
rs1002011 -- 33,250,460(+) G/A intron_variant
rs1002092914 -- 33,249,449(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
dgv10609n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830634 CNV loss 17160897

Additional Variant Information for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Additional Disease Information for HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene

Content
Loading form....