Aliases for HCG25 Gene

Subcategory (RNA class) for HCG25 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for HCG25 Gene

  • HLA Complex Group 25 2 3 5
  • HLA Complex Group 25 (Non-Protein Coding) 2 3
  • NONHSAG046331 92
  • NONHSAG046170 92
  • HSALNG0049507 167
  • NONHSAG046516 92
  • HSALNG0049506 167
  • NONHSAG043598 92
  • NONHSAG046002 92
  • NONHSAG046697 92
  • NONHSAG045816 92
  • DJ1033B10.16 3
  • Lnc-RPS18-3 168
  • HCG25 2

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033321
  • GC06P033325
  • GC06P033327
  • GC06P033260
  • GC06P033264
  • GC06P033266
  • GC06P033268
  • GC06P033296
  • GC06P033301
  • GC06P033311
  • GC06P033317

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCG25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

GeneHancer (GH) Regulatory Elements for HCG25 Gene

Promoters and enhancers for HCG25 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG25 Gene

Genomic Locations for HCG25 Gene
chr6:33,249,534-33,255,745
(GRCh38/hg38)
Size:
6,212 bases
Orientation:
Plus strand
chr6:33,217,311-33,222,766
(GRCh37/hg19)
Size:
5,456 bases
Orientation:
Plus strand

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

Post-translational modifications for HCG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Phenotypes From GWAS Catalog for HCG25 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

PathCards logo

SuperPathways for HCG25 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG25 Gene

Drugs & Compounds for HCG25 Gene

No Compound Related Data Available

Transcripts for HCG25 Gene

mRNA/cDNA for HCG25 Gene

16 RNACentral transcripts :
1 REFSEQ mRNAs :
32 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
29 NONCODE transcripts :
30 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25

Expression for HCG25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG25 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

Additional dbSNP identifiers (rs#s) for HCG25 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
dgv10609n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830634 CNV loss 17160897

Additional Variant Information for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Additional Disease Information for HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene