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Aliases for HCG24 Gene

Subcategory (RNA class) for HCG24 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG24 Gene

  • HLA Complex Group 24 2 3 5
  • HLA Complex Group 24 (Non-Protein Coding) 2 3

External Ids for HCG24 Gene

Previous GeneCards Identifiers for HCG24 Gene

  • GC00U915697
  • GC06U900754

Summaries for HCG24 Gene

GeneCards Summary for HCG24 Gene

HCG24 (HLA Complex Group 24) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HCG24 include Pelvic Varices.

Additional gene information for HCG24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG24 Gene

Genomics for HCG24 Gene

GeneHancer (GH) Regulatory Elements for HCG24 Gene

Promoters and enhancers for HCG24 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033143 Promoter 0.8 Ensembl 600.7 +0.1 113 0.2 ZBTB33 CEBPG NRF1 POLR2A HCG24 HLA-DPA3 LOC105375021 HLA-DPB1 COL11A2 HLA-DPA1 RPL32P1 HLA-DPB2 GC06M032900
GH06J033144 Enhancer 0.6 ENCODE 600.7 +1.2 1191 0.2 PKNOX1 IKZF2 RUNX3 CTCF EBF1 YY2 MAX ZNF350 MYC HCG24 HLA-DPA3 LOC105375021 LEMD2 BRD2 COL11A2 RXRB HLA-DPA1 HLA-DPB1 RPL32P1
GH06J033116 Promoter/Enhancer 1.3 Ensembl ENCODE 13.5 -25.8 -25787 2.8 SP1 CTCF ELF3 MLLT1 RAD21 KAT8 GATAD2A ZNF143 REST POLR2A PIR46525 HLA-DPB1 HLA-DPA1 HLA-DPB2 HCG24 RPL32P1 COL11A2 HSD17B8 PIR47274 GC06M032900
GH06J033311 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 6.8 +175.0 174962 13.3 SP1 ZFX CC2D1A ELF3 MNT SIX5 CBFA2T2 ZNF148 NKRF POLR2A DAXX TAPBP ZBTB22 VPS52 RING1 LEMD2 WDR46 RPS18 PHF1 RGL2
GH06J033160 Enhancer 1.2 FANTOM5 ENCODE 12 +18.1 18146 1.9 CTCF ZNF687 NCOA6 ZBTB7A SP7 RAD21 EGR1 KAT8 IKZF1 GLIS2 HSD17B8 HCG24 RPS18 HLA-DPB1 HLA-DPB2 COL11A2 GC06M032900
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG24 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG24 Gene

Genomic Locations for HCG24 Gene
chr6:33,143,388-33,147,767
(GRCh38/hg38)
Size:
4,380 bases
Orientation:
Plus strand
chr6:33,112,560-33,115,544
(GRCh37/hg19)
Size:
2,985 bases
Orientation:
Plus strand

Genomic View for HCG24 Gene

Genes around HCG24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG24 Gene

Proteins for HCG24 Gene

No data available for DME Specific Peptides for HCG24 Gene

Domains & Families for HCG24 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG24 Gene

Function for HCG24 Gene

Phenotypes From GWAS Catalog for HCG24 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG24 Gene

Localization for HCG24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG24 Gene

Pathways & Interactions for HCG24 Gene

PathCards logo

SuperPathways for HCG24 Gene

No Data Available

Interacting Proteins for HCG24 Gene

Gene Ontology (GO) - Biological Process for HCG24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG24 Gene

Drugs & Compounds for HCG24 Gene

No Compound Related Data Available

Transcripts for HCG24 Gene

mRNA/cDNA for HCG24 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG24 Gene

No ASD Table

Relevant External Links for HCG24 Gene

GeneLoc Exon Structure for
HCG24
ECgene alternative splicing isoforms for
HCG24

Expression for HCG24 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG24 Gene

mRNA differential expression in normal tissues according to GTEx for HCG24 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x13.2), Brain - Cerebellum (x10.8), and Brain - Nucleus accumbens (basal ganglia) (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of HCG24 Gene:

HCG24
genes like me logo Genes that share expression patterns with HCG24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG24 Gene

Orthologs for HCG24 Gene

Evolution for HCG24 Gene

ENSEMBL:
Gene Tree for HCG24 (if available)
TreeFam:
Gene Tree for HCG24 (if available)

No data available for Orthologs for HCG24 Gene

Paralogs for HCG24 Gene

No data available for Paralogs for HCG24 Gene

Variants for HCG24 Gene

Sequence variations from dbSNP and Humsavar for HCG24 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1001086029 -- 33,141,788(+) A/C upstream_transcript_variant
rs1001417789 -- 33,144,320(+) G/C intron_variant
rs1003455470 -- 33,146,487(+) C/A intron_variant
rs1003979 -- 33,146,394(+) T/A/C/G intron_variant
rs1004285945 -- 33,145,821(+) A/G intron_variant

Additional Variant Information for HCG24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG24

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG24 Gene

Disorders for HCG24 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG24 Gene - From: DISEASES

Disorder Aliases PubMed IDs
pelvic varices
- elite association - COSMIC cancer census association via MalaCards
Search HCG24 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HCG24

genes like me logo Genes that share disorders with HCG24: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG24 Gene

Publications for HCG24 Gene

No publications were found for HCG24 Gene.

Products for HCG24 Gene

Sources for HCG24 Gene

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