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Aliases for HCG23 Gene

Subcategory (RNA class) for HCG23 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG23 Gene

  • HLA Complex Group 23 2 3
  • HLA Complex Group 23 (Non-Protein Coding) 2 3
  • TSBP1 And BTNL2 Antisense RNA 1 5
  • DJ1077I5.3 3
  • TSBP1-AS1 5

External Ids for HCG23 Gene

Previous GeneCards Identifiers for HCG23 Gene

  • GC00U915693
  • GC06U900751
  • GC06P032359
  • GC06P032390
  • GC06P032419
  • GC06P032262
  • GC06P032417

Summaries for HCG23 Gene

GeneCards Summary for HCG23 Gene

HCG23 (HLA Complex Group 23) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG23 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG23 Gene

Genomics for HCG23 Gene

GeneHancer (GH) Regulatory Elements for HCG23 Gene

Promoters and enhancers for HCG23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J032254 Promoter/Enhancer 1.4 Ensembl ENCODE 610.1 +0.9 879 2.2 SP1 ZFX CSDE1 CTCF ZNF639 SMARCA4 IKZF1 DPF2 IKZF2 ZNF512 HCG23 TSBP1-AS1 HLA-DRB1 RNF5 HLA-DRB6 CYP21A1P PRRT1 SKIV2L CYP21A2 GC06M032285
GH06J032369 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 18.7 +116.1 116149 2.6 CEBPB CHD2 JUN RCOR1 JUND DEK FOS EP300 RAD21 RFX5 TSBP1 HLA-DRB1 HLA-DRB6 HLA-DQA2 HCG23 RNF5 C4A HLA-DRB5 HLA-DQB2 TSBP1-AS1
GH06J031567 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.4 -676.2 -676221 22.2 SP1 ZFX CTCF ZNF148 NKRF ZNF121 POLR2A ZNF687 ZSCAN21 MAFK TNF ATP6V1G2 LST1 GC06P032556 GC06P032575 GC06P032587 GC06P032596 GC06P032607 GC06P032675 GC06P032683
GH06J032393 Enhancer 0.8 Ensembl ENCODE 16.4 +139.2 139241 1.8 CTCF RFX1 SCRT2 JUND GABPA FOSL1 RAD21 SMC3 GATA3 JUN HLA-DRB6 HLA-DRB1 HCG23 C4A MICB BTNL2 GC06P032549 TSBP1-AS1
GH06J031538 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 5.5 -710.7 -710711 10.5 SP1 ZNF652 ZFX CC2D1A ELF3 CTCF ZKSCAN8 MNT SIX5 ZNF148 DDX39B NFKBIL1 ATP6V1G2 DDX39B-AS1 PIR59933 DHX16 ATF6B MDC1 LSM2 LY6G5B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG23 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG23 Gene

Genomic Locations for HCG23 Gene
chr6:32,254,640-32,407,763
(GRCh38/hg38)
Size:
153,124 bases
Orientation:
Plus strand
chr6:32,358,287-32,361,463
(GRCh37/hg19)
Size:
3,177 bases
Orientation:
Plus strand

Genomic View for HCG23 Gene

Genes around HCG23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG23 Gene

No data available for DME Specific Peptides for HCG23 Gene

Domains & Families for HCG23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG23 Gene

Function for HCG23 Gene

Phenotypes From GWAS Catalog for HCG23 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG23 Gene

Localization for HCG23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG23 Gene

Pathways & Interactions for HCG23 Gene

PathCards logo

SuperPathways for HCG23 Gene

No Data Available

Interacting Proteins for HCG23 Gene

Gene Ontology (GO) - Biological Process for HCG23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG23 Gene

Drugs & Compounds for HCG23 Gene

No Compound Related Data Available

Transcripts for HCG23 Gene

mRNA/cDNA for HCG23 Gene

(12) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for HCG23 Gene

HLA complex group 23 (non-protein coding):
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG23 Gene

No ASD Table

Relevant External Links for HCG23 Gene

GeneLoc Exon Structure for
HCG23
ECgene alternative splicing isoforms for
HCG23

Expression for HCG23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG23 Gene

mRNA differential expression in normal tissues according to GTEx for HCG23 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of HCG23 Gene:

HCG23

SOURCE GeneReport for Unigene cluster for HCG23 Gene:

Hs.57692
genes like me logo Genes that share expression patterns with HCG23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG23 Gene

Orthologs for HCG23 Gene

Evolution for HCG23 Gene

ENSEMBL:
Gene Tree for HCG23 (if available)
TreeFam:
Gene Tree for HCG23 (if available)

No data available for Orthologs for HCG23 Gene

Paralogs for HCG23 Gene

No data available for Paralogs for HCG23 Gene

Variants for HCG23 Gene

Sequence variations from dbSNP and Humsavar for HCG23 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000365591 -- 32,388,895(+) C/T upstream_transcript_variant
rs1000388513 -- 32,391,728(+) G/A non_coding_transcript_variant
rs1000738756 -- 32,391,924(+) C/G intron_variant
rs1000819615 -- 32,388,690(+) G/A upstream_transcript_variant
rs1002093836 -- 32,389,856(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG23 Gene

Variant ID Type Subtype PubMed ID
dgv1011n67 CNV loss 20364138
dgv10404n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
dgv10472n54 CNV loss 21841781
dgv1754e212 CNV loss 25503493
esv3570969 CNV loss 25503493
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv602110 CNV loss 21841781
nsv7882 CNV loss 18304495
nsv830630 CNV loss 17160897

Additional Variant Information for HCG23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG23

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG23 Gene

Disorders for HCG23 Gene

Additional Disease Information for HCG23

No disorders were found for HCG23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG23 Gene

Publications for HCG23 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  2. Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PMID: 22688191) Bergen SE … Sullivan PF (Molecular psychiatry 2012) 3 58
  3. Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population. (PMID: 21804548) Hirota T … Tamari M (Nature genetics 2011) 3 58

Products for HCG23 Gene

Sources for HCG23 Gene

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