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Aliases for HCG21 Gene

Subcategory (RNA class) for HCG21 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG21 Gene

  • HLA Complex Group 21 2 3 5
  • HLA Complex Group 21 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 150 2
  • NCRNA00150 3

External Ids for HCG21 Gene

Previous GeneCards Identifiers for HCG21 Gene

  • GC00U915704
  • GC06U900758
  • GC06M030914

Summaries for HCG21 Gene

GeneCards Summary for HCG21 Gene

HCG21 (HLA Complex Group 21) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG21 Gene

Genomics for HCG21 Gene

GeneHancer (GH) Regulatory Elements for HCG21 Gene

Promoters and enhancers for HCG21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030955 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 600.7 +0.1 68 1.3 SP1 ZFX CBFA2T2 ZNF148 MLLT1 POLR2A GTF2F1 ZNF687 NCOA6 TRIM24 SFTA2 HCG21 VARS2 DDR1 DDR1-DT MICD GNL1 CCHCR1
GH06J030981 Enhancer 0.7 ENCODE 33.9 -26.6 -26564 0.7 SP7 PRDM1 MZF1 CREB1 GLIS2 PRDM10 CTCF ZNF639 ZNF24 ZNF692 MUC21 HCG21 MUCL3 VARS2 GTF2H4 DDR1 NAPGP2
GH06J031007 Enhancer 0.7 Ensembl ENCODE 33 -52.2 -52181 1.4 POLR2A RUNX3 FOS FOSL2 JUND ZNF362 MUC22 HCG21 MUCL3 LY6G5C PSORS1C1 DDX39B GC06P032835
GH06J030875 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +78.9 78900 3.5 ZFX CC2D1A ELF3 CTCF ZKSCAN8 CBFA2T2 ZNF148 MLLT1 CEBPG GTF2F1 DDR1 DDR1-DT VARS2 DDX39B ABCF1 MDC1 ETF1P1 LSM2 NFKBIL1 TRIM39
GH06J030777 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +174.9 174923 6.9 ZNF652 ZFX ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 MLLT1 CEBPG RERE IER3 GTF2H4 VARS2 MDC1 DDR1 PPP1R10 HLA-U FLOT1 DDX39B LINC00243
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG21 Gene

Genomic Locations for HCG21 Gene
chr6:30,945,979-30,955,720
(GRCh38/hg38)
Size:
9,742 bases
Orientation:
Minus strand
chr6:30,913,756-30,922,639
(GRCh37/hg19)
Size:
8,884 bases
Orientation:
Minus strand

Genomic View for HCG21 Gene

Genes around HCG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG21 Gene

Proteins for HCG21 Gene

No data available for DME Specific Peptides for HCG21 Gene

Domains & Families for HCG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG21 Gene

Function for HCG21 Gene

Phenotypes From GWAS Catalog for HCG21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG21 Gene

Localization for HCG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG21 Gene

Pathways & Interactions for HCG21 Gene

PathCards logo

SuperPathways for HCG21 Gene

No Data Available

Interacting Proteins for HCG21 Gene

Gene Ontology (GO) - Biological Process for HCG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG21 Gene

Drugs & Compounds for HCG21 Gene

No Compound Related Data Available

Transcripts for HCG21 Gene

mRNA/cDNA for HCG21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG21 Gene

No ASD Table

Relevant External Links for HCG21 Gene

GeneLoc Exon Structure for
HCG21
ECgene alternative splicing isoforms for
HCG21

Expression for HCG21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG21 Gene

mRNA differential expression in normal tissues according to GTEx for HCG21 Gene

This gene is overexpressed in Stomach (x37.0) and Esophagus - Mucosa (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCG21 Gene:

HCG21
genes like me logo Genes that share expression patterns with HCG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG21 Gene

Orthologs for HCG21 Gene

Evolution for HCG21 Gene

ENSEMBL:
Gene Tree for HCG21 (if available)
TreeFam:
Gene Tree for HCG21 (if available)

No data available for Orthologs for HCG21 Gene

Paralogs for HCG21 Gene

No data available for Paralogs for HCG21 Gene

Variants for HCG21 Gene

Sequence variations from dbSNP and Humsavar for HCG21 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000631747 -- 30,952,726(-) G/T intron_variant
rs1001103911 -- 30,947,837(-) C/T intron_variant
rs1001154652 -- 30,948,278(-) G/A intron_variant
rs1001363225 -- 30,955,752(-) G/A/T upstream_transcript_variant
rs1001694888 -- 30,949,606(-) C/T intron_variant

Additional Variant Information for HCG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG21 Gene

Disorders for HCG21 Gene

Additional Disease Information for HCG21

No disorders were found for HCG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG21 Gene

Publications for HCG21 Gene

No publications were found for HCG21 Gene.

Products for HCG21 Gene

Sources for HCG21 Gene

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