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Aliases for HCG2040054 Gene

Subcategory (RNA class) for HCG2040054 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for HCG2040054 Gene

  • Uncharacterized LOC644093 3

External Ids for HCG2040054 Gene

Summaries for HCG2040054 Gene

GeneCards Summary for HCG2040054 Gene

HCG2040054 (Uncharacterized LOC644093) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for HCG2040054 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG2040054 Gene

Genomics for HCG2040054 Gene

GeneHancer (GH) Regulatory Elements for HCG2040054 Gene

Promoters and enhancers for HCG2040054 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J047528 Enhancer 0.2 Ensembl 600.7 +1.0 964 0.6 PIR47133 HCG2040054 ENSG00000235760 MSH2 PIR54322 KCNK12
GH02J047533 Enhancer 1 Ensembl ENCODE 0.4 +7.1 7064 1.6 SP7 ZNF488 PRDM10 ZIC2 ZEB2 ZNF639 POLR2A ZNF629 PATZ1 ARNT MSH2 HCG2040054 ENSG00000235760 PIR54322 KCNK12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG2040054 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG2040054 Gene

Genomic Locations for HCG2040054 Gene
chr2:47,527,537-47,529,164
(GRCh38/hg38)
Size:
1,628 bases
Orientation:
Plus strand

Genomic View for HCG2040054 Gene

Genes around HCG2040054 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG2040054 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG2040054 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG2040054 Gene

Proteins for HCG2040054 Gene

Post-translational modifications for HCG2040054 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG2040054 Gene

Domains & Families for HCG2040054 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG2040054 Gene

Function for HCG2040054 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG2040054 Gene

Localization for HCG2040054 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG2040054 Gene

Pathways & Interactions for HCG2040054 Gene

PathCards logo

SuperPathways for HCG2040054 Gene

No Data Available

Interacting Proteins for HCG2040054 Gene

Gene Ontology (GO) - Biological Process for HCG2040054 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG2040054 Gene

Drugs & Compounds for HCG2040054 Gene

No Compound Related Data Available

Transcripts for HCG2040054 Gene

mRNA/cDNA for HCG2040054 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG2040054 Gene

No ASD Table

Relevant External Links for HCG2040054 Gene

GeneLoc Exon Structure for
HCG2040054

Expression for HCG2040054 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG2040054 Gene

Orthologs for HCG2040054 Gene

No data available for Orthologs and Evolution for HCG2040054 Gene

Paralogs for HCG2040054 Gene

No data available for Paralogs for HCG2040054 Gene

Variants for HCG2040054 Gene

Sequence variations from dbSNP and Humsavar for HCG2040054 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000079427 -- 47,529,126(+) A/G non_coding_transcript_variant
rs1000248873 -- 47,529,115(+) C/T non_coding_transcript_variant
rs1000263159 -- 47,528,868(+) C/G intron_variant
rs1000700369 -- 47,528,168(+) T/C intron_variant
rs1000771238 -- 47,529,385(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG2040054 Gene

Variant ID Type Subtype PubMed ID
nsv1004828 CNV gain 25217958
nsv998314 CNV loss 25217958
nsv999576 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for HCG2040054 Gene

Disorders for HCG2040054 Gene

No disorders were found for HCG2040054 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG2040054 Gene

Publications for HCG2040054 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

No data available for External Links for HCG2040054 Gene

Products for HCG2040054 Gene

Sources for HCG2040054 Gene

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