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Aliases for HCG20 Gene

Subcategory (RNA class) for HCG20 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG20 Gene

  • HLA Complex Group 20 2 3 5
  • HLA Complex Group 20 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 149 2
  • NCRNA00149 3

External Ids for HCG20 Gene

Previous GeneCards Identifiers for HCG20 Gene

  • GC00U915703
  • GC06U900757
  • GC06P030735
  • GC06P030736
  • GC06P030766
  • GC06P032287
  • GC06P030857
  • GC06P030869
  • GC06P030917
  • GC06P031069
  • GC06P031214
  • GC06P031423
  • GC06P032066

Summaries for HCG20 Gene

GeneCards Summary for HCG20 Gene

HCG20 (HLA Complex Group 20) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG20 Gene

Genomics for HCG20 Gene

GeneHancer (GH) Regulatory Elements for HCG20 Gene

Promoters and enhancers for HCG20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030739 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.6 -1585 6.5 ZNF652 SP1 CC2D1A ZFX ELF3 ZKSCAN8 MNT ZNF148 NKRF POLR2A FLOT1 HCG20 IER3 IER3-AS1 MDC1 LY6G5B DDX39B DHX16 NFKBIL1 GTF2H4
GH06J030777 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +36.3 36306 6.9 ZNF652 ZFX ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 MLLT1 CEBPG RERE IER3 GTF2H4 VARS2 MDC1 DDR1 PPP1R10 HLA-U FLOT1 DDX39B LINC00243
GH06J030757 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 9.3 +19.8 19828 14 ZNF652 SP1 ELF3 CC2D1A ZFX ZKSCAN8 CBFA2T2 ZNF148 NKRF POLR2A IER3 MDC1 PPP1R10 VARS2 GTF2H4 HCG18 LY6G5B DDR1 C6orf136 PPP1R18
GH06J030792 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +49.4 49387 2.1 SP1 ZFX ELF3 ZNF687 SP7 MLLT1 ZNF639 MTA1 IKZF1 DPF2 IER3 VARS2 FLOT1 LINC00243 DDR1-DT DDR1 GTF2H4 HCG20 MUCL3 HLA-E
GH06J030746 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 6.9 +6.6 6585 8.8 ZNF652 ZFX CTCF ELF3 ZKSCAN8 POLR2A CEBPG ZNF687 NFIB ZSCAN21 RN7SL353P MDC1 IER3 GTF2H4 PPP1R10 VARS2 PAIP1P1 LY6G5B DHX16 C6orf136
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG20 Gene

Genomic Locations for HCG20 Gene
chr6:30,744,491-30,792,250
(GRCh38/hg38)
Size:
47,760 bases
Orientation:
Plus strand
chr6:30,734,602-30,760,027
(GRCh37/hg19)
Size:
25,426 bases
Orientation:
Plus strand

Genomic View for HCG20 Gene

Genes around HCG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG20 Gene

No data available for DME Specific Peptides for HCG20 Gene

Domains & Families for HCG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG20 Gene

Function for HCG20 Gene

Phenotypes From GWAS Catalog for HCG20 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG20 Gene

Localization for HCG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG20 Gene

Pathways & Interactions for HCG20 Gene

PathCards logo

SuperPathways for HCG20 Gene

No Data Available

Interacting Proteins for HCG20 Gene

Gene Ontology (GO) - Biological Process for HCG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG20 Gene

Drugs & Compounds for HCG20 Gene

No Compound Related Data Available

Transcripts for HCG20 Gene

mRNA/cDNA for HCG20 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG20 Gene

No ASD Table

Relevant External Links for HCG20 Gene

GeneLoc Exon Structure for
HCG20
ECgene alternative splicing isoforms for
HCG20

Expression for HCG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG20 Gene

mRNA differential expression in normal tissues according to GTEx for HCG20 Gene

This gene is overexpressed in Liver (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of HCG20 Gene:

HCG20
genes like me logo Genes that share expression patterns with HCG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG20 Gene

Orthologs for HCG20 Gene

Evolution for HCG20 Gene

ENSEMBL:
Gene Tree for HCG20 (if available)
TreeFam:
Gene Tree for HCG20 (if available)

No data available for Orthologs for HCG20 Gene

Paralogs for HCG20 Gene

No data available for Paralogs for HCG20 Gene

Variants for HCG20 Gene

Sequence variations from dbSNP and Humsavar for HCG20 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000041318 -- 30,779,263(+) A/G intron_variant
rs1000151222 -- 30,777,825(+) A/G intron_variant
rs1000221621 -- 30,769,991(+) A/G intron_variant
rs1000366269 -- 30,786,615(+) T/C intron_variant
rs1000655924 -- 30,770,306(+) T/C intron_variant

Additional Variant Information for HCG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG20

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG20 Gene

Disorders for HCG20 Gene

Additional Disease Information for HCG20

No disorders were found for HCG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG20 Gene

Publications for HCG20 Gene

No publications were found for HCG20 Gene.

Products for HCG20 Gene

Sources for HCG20 Gene

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