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Aliases for HCG17 Gene

Subcategory (RNA class) for HCG17 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG17 Gene

  • HLA Complex Group 17 2 3 5
  • HLA Complex Group 17 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 46 2 3
  • Non-Protein Coding RNA 46 2
  • NCRNA00046 3
  • LINC00046 3
  • HCG18 3

External Ids for HCG17 Gene

Previous GeneCards Identifiers for HCG17 Gene

  • GC00U915706
  • GC06U900760
  • GC06M030202

Summaries for HCG17 Gene

GeneCards Summary for HCG17 Gene

HCG17 (HLA Complex Group 17) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG17 Gene

Genomics for HCG17 Gene

GeneHancer (GH) Regulatory Elements for HCG17 Gene

Promoters and enhancers for HCG17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030324 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.2 -166 3.8 SP1 CC2D1A ELF3 ZFX MNT NKRF MLLT1 POLR2A GTF2F1 CSDE1 HCG18 HCG17 TRIM39 MDC1 GTF2H4 ZNRD1ASP RPL23AP1 ABCF1 PAIP1P1 DHX16
GH06J030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 10.7 -393.4 -393392 7.7 HDGF ZNF652 SP1 ZFX CC2D1A ELF3 CTCF ZKSCAN8 MNT SIX5 MDC1 TUBB LY6G5B DDX39B TRIM39 DHX16 HCG18 PPP1R10 GTF2H4 PAIP1P1
GH06J030777 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -454.7 -454663 6.9 ZNF652 ZFX ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 MLLT1 CEBPG RERE IER3 GTF2H4 VARS2 MDC1 DDR1 PPP1R10 HLA-U FLOT1 DDX39B LINC00243
GH06J030907 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -582.3 -582323 2.2 SP1 CC2D1A ELF3 ZKSCAN8 MNT SIX5 ZNF148 NKRF POLR2A MLLT1 GTF2H4 VARS2 GC06P032828 MDC1 DDX39B LY6G5B LSM2 TRIM39 PPP1R10 DHX16
GH06J030162 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.8 +162.3 162349 2.8 ELF3 MNT POLR2A ZNF121 CEBPG AHR SP7 SP1 PPARG SP5 TRIM15 TRIM10 MDC1 GTF2H4 HCG18 ZNRD1ASP PPP1R10 TRIM39 ETF1P1 PAIP1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG17 Gene

Genomic Locations for HCG17 Gene
chr6:30,234,039-30,326,134
(GRCh38/hg38)
Size:
92,096 bases
Orientation:
Minus strand
chr6:30,201,816-30,293,911
(GRCh37/hg19)
Size:
92,096 bases
Orientation:
Minus strand

Genomic View for HCG17 Gene

Genes around HCG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG17 Gene

No data available for DME Specific Peptides for HCG17 Gene

Domains & Families for HCG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG17 Gene

Function for HCG17 Gene

Phenotypes From GWAS Catalog for HCG17 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG17 Gene

Localization for HCG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG17 Gene

Pathways & Interactions for HCG17 Gene

PathCards logo

SuperPathways for HCG17 Gene

No Data Available

Interacting Proteins for HCG17 Gene

Gene Ontology (GO) - Biological Process for HCG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG17 Gene

Drugs & Compounds for HCG17 Gene

No Compound Related Data Available

Transcripts for HCG17 Gene

mRNA/cDNA for HCG17 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG17 Gene

No ASD Table

Relevant External Links for HCG17 Gene

GeneLoc Exon Structure for
HCG17
ECgene alternative splicing isoforms for
HCG17

Expression for HCG17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG17 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG17 Gene:

HCG17
genes like me logo Genes that share expression patterns with HCG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG17 Gene

Orthologs for HCG17 Gene

Evolution for HCG17 Gene

ENSEMBL:
Gene Tree for HCG17 (if available)
TreeFam:
Gene Tree for HCG17 (if available)

No data available for Orthologs for HCG17 Gene

Paralogs for HCG17 Gene

No data available for Paralogs for HCG17 Gene

Variants for HCG17 Gene

Sequence variations from dbSNP and Humsavar for HCG17 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000078658 -- 30,298,192(-) T/C intron_variant
rs1000125212 -- 30,245,966(-) T/C intron_variant
rs1000160285 -- 30,270,193(-) G/A intron_variant
rs1000183297 -- 30,256,804(-) A/C intron_variant
rs1000187876 -- 30,310,481(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG17 Gene

Variant ID Type Subtype PubMed ID
esv2428476 CNV deletion 19546169
esv2657403 CNV deletion 23128226
esv2731777 CNV deletion 23290073
esv2731781 CNV deletion 23290073
esv2731782 CNV deletion 23290073
esv2731783 CNV deletion 23290073
esv2731785 CNV deletion 23290073
esv2731786 CNV deletion 23290073
esv3303361 CNV mobile element insertion 20981092
esv3308985 CNV mobile element insertion 20981092
esv3411275 CNV duplication 20981092
esv3415851 CNV insertion 20981092
esv3567506 CNV deletion 23714750
esv3608505 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv601264 CNV loss 21841781

Additional Variant Information for HCG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG17

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG17 Gene

Disorders for HCG17 Gene

Additional Disease Information for HCG17

No disorders were found for HCG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG17 Gene

Publications for HCG17 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for HCG17 Gene

Sources for HCG17 Gene

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