HCG15 Gene (RNA Gene)

HLA Complex Group 15

GC06P029185
GIFtS:
12
See more...

Aliases for HCG15 Gene

Subcategory (RNA class) for HCG15 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HCG15 Gene

  • HLA Complex Group 15 2 3 5
  • HCG15 2 5 165
  • HLA Complex Group 16 (Non-Protein Coding) 2 3
  • HLA Complex Group 15 (Non-Protein Coding) 2 3
  • HLA Complex Group 16 2
  • NONHSAG046013.2 91
  • NONHSAG046346.2 91
  • NONHSAG043339.2 91
  • NONHSAG045536.2 91
  • NONHSAG045825.2 91
  • NONHSAG046533.2 91
  • NONHSAG045635.2 91
  • HSALNG0049030 164
  • DJ25J6.6 2
  • DJ25J6.7 2
  • HCG16 3

External Ids for HCG15 Gene

Additional External Ids for HCG15 Gene

Previous HGNC Symbols for HCG15 Gene

  • HCG16

Previous GeneCards Identifiers for HCG15 Gene

  • GC00U915690
  • GC06U900750
  • GC06P028957
  • GC06P028960
  • GC06P028961
  • GC06P028965
  • GC06P028969
  • GC06P028986
  • GC06P028992

Summaries for HCG15 Gene

GeneCards Summary for HCG15 Gene

HCG15 (HLA Complex Group 15) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HCG15 include Lung Oat Cell Carcinoma and Cerebral Degeneration.

Additional gene information for HCG15 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG15 Gene

Genomics for HCG15 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HCG15 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG15 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCG15 Gene

Genomic Locations for HCG15 Gene
chr6:28,984,749-28,988,567
(GRCh38/hg38)
Size:
3,819 bases
Orientation:
Plus strand
chr6:28,953,980-28,955,261
(GRCh37/hg19)
Size:
1,282 bases
Orientation:
Plus strand

Genomic View for HCG15 Gene

Genes around HCG15 on UCSC Golden Path with GeneCards custom track
HCG15 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG15 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for HCG15 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for HCG15 Gene

Domains & Families for HCG15 Gene

Gene Families for HCG15 Gene

HGNC:
genes like me logo Genes that share domains with HCG15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG15 Gene

Function for HCG15 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HCG15 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG15 Gene

Localization for HCG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG15 Gene

Pathways & Interactions for HCG15 Gene

PathCards logo

SuperPathways for HCG15 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG15 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG15 Gene

Drugs & Compounds for HCG15 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HCG15 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG15 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004B8A08_9606 lncRNA 1032 4

Ensembl: ENST00000414692 (view in UCSC) , ENST00000423340 (view in UCSC) , ENST00000426098 (view in UCSC) , ENST00000433739 (view in UCSC) , ENST00000438190 (view in UCSC) ,

LncBook: HSALNT0103433, HSALNT0103434, HSALNT0103435, HSALNT0103436, HSALNT0103437,

LNCipedia: HCG15:11,

NONCODE: NONHSAT108501.2, NONHSAT116311.2, NONHSAT116510.2, NONHSAT116862.2, NONHSAT117213.2,

URS0000ABD815_9606 lncRNA 707 2

HGNC: 18361,

RefSeq: NR_135289,

URS0000ABD8C1_9606 lncRNA 893 1

RefSeq: NR_145490,

URS00008BFFB7_9606 lncRNA 1167 3

LncBook: HSALNT0103430,

LNCipedia: HCG15:10,

NONCODE: NONHSAT108500.2,

URS0000D59B94_9606 lncRNA 1541 2

LncBook: HSALNT0103428,

LNCipedia: HCG15:9,

HCG15 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCG15 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG15 Gene

No ASD Table

Relevant External Links for HCG15 Gene

GeneLoc Exon Structure for
HCG15

Expression for HCG15 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG15 Gene

mRNA expression in normal human tissues for HCG15 Gene
mRNA expression by GTEx for HCG15 Gene
genes like me logo Genes that share expression patterns with HCG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG15 Gene

Orthologs for HCG15 Gene

Evolution for HCG15 Gene

ENSEMBL:
Gene Tree for HCG15 (if available)
TreeFam:
Gene Tree for HCG15 (if available)

No data available for Orthologs for HCG15 Gene

Paralogs for HCG15 Gene

No data available for Paralogs for HCG15 Gene

Variants for HCG15 Gene

Additional dbSNP identifiers (rs#s) for HCG15 Gene

Additional Variant Information for HCG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG15 Gene

Disorders for HCG15 Gene

MalaCards: The human disease database

(4) MalaCards diseases for HCG15 Gene - From: DISEASES

Disorder Aliases PubMed IDs
lung oat cell carcinoma
  • oat cell carcinoma
cerebral degeneration
  • brain degeneration
cryptorchidism, unilateral or bilateral
  • undescended testis
orofaciodigital syndrome viii
  • cleft lip/palate with abnormal thumbs and microcephaly
- elite association - COSMIC cancer census association via MalaCards
Search HCG15 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HCG15

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with HCG15: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG15 Gene

Publications for HCG15 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for HCG15 gene in Mastermind

Products for HCG15 Gene

Sources for HCG15 Gene