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HCG15 Gene(RNA Gene)

HLA Complex Group 15

GCID:
GC06P028986
GIFtS:
12
Genes Participants
UDN Logo

Aliases for HCG15 Gene

Subcategory (RNA class) for HCG15 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG15 Gene

  • HLA Complex Group 15 2 3 5
  • HLA Complex Group 15 (Non-Protein Coding) 2 3
  • HLA Complex Group 16 (Non-Protein Coding) 2 3
  • HLA Complex Group 16 2
  • HCG16 3

External Ids for HCG15 Gene

Previous HGNC Symbols for HCG15 Gene

  • HCG16

Previous GeneCards Identifiers for HCG15 Gene

  • GC00U915690
  • GC06U900750
  • GC06P028957
  • GC06P028960
  • GC06P028961
  • GC06P028965
  • GC06P028969

Summaries for HCG15 Gene

GeneCards Summary for HCG15 Gene

HCG15 (HLA Complex Group 15) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG15 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG15 Gene

Genomics for HCG15 Gene

GeneHancer (GH) Regulatory Elements for HCG15 Gene

Promoters and enhancers for HCG15 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG15 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG15 Gene

Genomic Locations for HCG15 Gene
chr6:28,986,203-28,987,484
(GRCh38/hg38)
Size:
1,282 bases
Orientation:
Plus strand
chr6:28,953,980-28,955,261
(GRCh37/hg19)
Size:
1,282 bases
Orientation:
Plus strand

Genomic View for HCG15 Gene

Genes around HCG15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG15 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HCG15 Gene

Proteins for HCG15 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for HCG15 Gene

Domains & Families for HCG15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG15 Gene

Function for HCG15 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HCG15 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG15 Gene

Localization for HCG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG15 Gene

Pathways & Interactions for HCG15 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
PathCards logo

SuperPathways for HCG15 Gene

No Data Available

Interacting Proteins for HCG15 Gene

Gene Ontology (GO) - Biological Process for HCG15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG15 Gene

Drugs & Compounds for HCG15 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for HCG15 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HCG15 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG15 Gene

No ASD Table

Relevant External Links for HCG15 Gene

GeneLoc Exon Structure for
HCG15
ECgene alternative splicing isoforms for
HCG15

Expression for HCG15 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG15 Gene

mRNA expression in normal human tissues for HCG15 Gene
mRNA expression by GTEx for HCG15 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG15 Gene:

HCG15
genes like me logo Genes that share expression patterns with HCG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG15 Gene

Orthologs for HCG15 Gene

Evolution for HCG15 Gene

ENSEMBL:
Gene Tree for HCG15 (if available)
TreeFam:
Gene Tree for HCG15 (if available)

No data available for Orthologs for HCG15 Gene

Paralogs for HCG15 Gene

No data available for Paralogs for HCG15 Gene

Variants for HCG15 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for HCG15 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000160894 -- 28,985,068(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000798314 -- 28,984,832(+) C/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1001060852 -- 28,988,689(+) G/C downstream_transcript_variant
rs1001560728 -- 28,983,867(+) C/G upstream_transcript_variant
rs1001676598 -- 28,984,746(+) G/A upstream_transcript_variant

Additional Variant Information for HCG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG15 Gene

Disorders for HCG15 Gene

Additional Disease Information for HCG15

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HCG15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG15 Gene

Publications for HCG15 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

ExternalLinks

View latest publications for HCG15 gene in Mastermind

Products for HCG15 Gene

Sources for HCG15 Gene

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