Aliases for HCG14 Gene

Subcategory (RNA class) for HCG14 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HCG14 Gene

  • HLA Complex Group 14 2 3 5
  • HCG14 2 5 165
  • HLA Complex Group 14 (Non-Protein Coding) 2 3
  • DJ111M5.4 2 3
  • NONHSAG043331.2 91
  • NONHSAG046341.2 91
  • NONHSAG046174.2 91
  • NONHSAG045533.2 91
  • NONHSAG045630.2 91
  • NONHSAG046527.2 91
  • HSALNG0049015 164

External Ids for HCG14 Gene

Additional External Ids for HCG14 Gene

Previous GeneCards Identifiers for HCG14 Gene

  • GC00U915689
  • GC06U900749
  • GC06P028865

Summaries for HCG14 Gene

GeneCards Summary for HCG14 Gene

HCG14 (HLA Complex Group 14) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HCG14 include Epiphyseal Dysplasia, Multiple, 4.

Additional gene information for HCG14 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG14 Gene

Genomics for HCG14 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCG14 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG14 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCG14 Gene

Genomic Locations for HCG14 Gene
chr6:28,896,530-28,897,757
(GRCh38/hg38)
Size:
1,228 bases
Orientation:
Plus strand
chr6:28,864,307-28,865,099
(GRCh37/hg19)
Size:
793 bases
Orientation:
Plus strand

Genomic View for HCG14 Gene

Genes around HCG14 on UCSC Golden Path with GeneCards custom track
HCG14 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCG14 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG14 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG14 Gene

No data available for DME Specific Peptides for HCG14 Gene

Domains & Families for HCG14 Gene

Gene Families for HCG14 Gene

genes like me logo Genes that share domains with HCG14: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG14 Gene

Function for HCG14 Gene

Phenotypes From GWAS Catalog for HCG14 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG14 Gene

Localization for HCG14 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCG14 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG14 Gene

Pathways & Interactions for HCG14 Gene

PathCards logo

SuperPathways for HCG14 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG14 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG14 Gene

Drugs & Compounds for HCG14 Gene

No Compound Related Data Available

Transcripts for HCG14 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG14 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055BBBB_9606 lncRNA 413 4

Ensembl: ENST00000413667 (view in UCSC) , ENST00000432275 (view in UCSC) , ENST00000444986 (view in UCSC) ,

LncBook: HSALNT0103382, HSALNT0103383, HSALNT0103384, HSALNT0103385, HSALNT0103387,

LNCipedia: HCG14:1,

NONCODE: NONHSAT108490.2, NONHSAT116306.2, NONHSAT117865.2,

URS000075B70A_9606 lncRNA 411 3

HGNC: 18323,

RefSeq: NR_104117,

LNCipedia: HCG14:2,

URS00008C198D_9606 lncRNA 411 2

Ensembl: ENST00000412400 (view in UCSC) , ENST00000420516 (view in UCSC) , ENST00000444715 (view in UCSC) ,

NONCODE: NONHSAT116503.2, NONHSAT117556.2, NONHSAT118222.2,

URS00009C235B_9606 lncRNA 413 2

LncBook: HSALNT0103388,

NONCODE: NONHSAT207034.1,

URS0000D58CFD_9606 lncRNA 1165 1

LNCipedia: HCG14:4,

HCG14 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCG14 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG14 Gene

No ASD Table

Relevant External Links for HCG14 Gene

GeneLoc Exon Structure for
HCG14

Expression for HCG14 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG14 Gene

mRNA differential expression in normal tissues according to GTEx for HCG14 Gene

This gene is overexpressed in Testis (x5.9).
genes like me logo Genes that share expression patterns with HCG14: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG14 Gene

Orthologs for HCG14 Gene

Evolution for HCG14 Gene

ENSEMBL:
Gene Tree for HCG14 (if available)
TreeFam:
Gene Tree for HCG14 (if available)

No data available for Orthologs for HCG14 Gene

Paralogs for HCG14 Gene

No data available for Paralogs for HCG14 Gene

Variants for HCG14 Gene

Additional dbSNP identifiers (rs#s) for HCG14 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG14 Gene

Variant ID Type Subtype PubMed ID
esv3608464 CNV gain 21293372
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv462667 CNV gain 19166990
nsv510021 OTHER sequence alteration 20534489
nsv601212 CNV gain 21841781
nsv830622 CNV gain 17160897

Additional Variant Information for HCG14 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG14

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG14 Gene

Disorders for HCG14 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG14 Gene - From: DISEASES

Disorder Aliases PubMed IDs
epiphyseal dysplasia, multiple, 4
  • edm4
- elite association - COSMIC cancer census association via MalaCards
Search HCG14 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HCG14

genes like me logo Genes that share disorders with HCG14: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG14 Gene

Publications for HCG14 Gene

  1. Celiac Diasease-associated lncRNA Named HCG14 Regulates NOD1 Expression in Intestinal Cells. (PMID: 29601440) Santin I … Bilbao JR (Journal of pediatric gastroenterology and nutrition 2018) 2 3

Products for HCG14 Gene

Sources for HCG14 Gene