Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG11 Gene

Subcategory (RNA class) for HCG11 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCG11 Gene

  • HLA Complex Group 11 2 3 5
  • HLA Complex Group 11 (Non-Protein Coding) 2 3
  • CTA-14H9.3 3
  • BK14H9.3 3

External Ids for HCG11 Gene

Previous GeneCards Identifiers for HCG11 Gene

  • GC06U900732
  • GC06P026522
  • GC06P026523
  • GC06P026464
  • GC06P026525
  • GC06P026528
  • GC06P026534
  • GC06P026549
  • GC06P026592
  • GC06P026620
  • GC06P026632
  • GC06P026661
  • GC06P027351
  • GC06P026658
  • GC06P026703
  • GC06P026749
  • GC06P026819
  • GC06P026916
  • GC06P027015
  • GC06P027087
  • GC06P027234

Summaries for HCG11 Gene

GeneCards Summary for HCG11 Gene

HCG11 (HLA Complex Group 11) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HCG11 include Prostate Cancer.

Additional gene information for HCG11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG11 Gene

Genomics for HCG11 Gene

GeneHancer (GH) Regulatory Elements for HCG11 Gene

Promoters and enhancers for HCG11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026520 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE 600.7 +0.4 395 4.2 ZNF652 ZFX ELF3 ZKSCAN8 ZNF148 NKRF MLLT1 ZNF121 CEBPG RERE HCG11 TRL-CAG1-7 PIR62171 GC06P027629 GC06P027573 ZNF322 ENSG00000261584 ABT1 BTN2A3P HMGN4
GH06J026471 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 16.9 -46.3 -46286 6.9 HDGF CC2D1A SP1 ELF3 ZKSCAN8 MNT CBFA2T2 POLR2A CEBPG CSDE1 BTN3A2 BTN2A2 HMGN4 BTN2A1 BTN2A3P HCG11 ABT1 RNU6-502P BTN1A1 BTN3A1
GH06J026015 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -496.0 -495958 19.9 MTA3 SP1 ZNF652 ZFX CC2D1A ELF3 CTCF ZKSCAN8 ZNF148 NKRF HIST1H4B HIST1H3B HIST1H2AB ABT1 BTN2A2 BTN2A1 BTN2A3P HMGN4 ZNF322 ENSG00000272462
GH06J026120 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.9 -397.4 -397362 8.5 MTA3 ZNF652 ZFX SP1 CC2D1A ELF3 NKRF POLR2A MLLT1 ZNF121 HIST1H2AC PIR32750 PIR33095 PIR44445 HIST1H2BC ABT1 BTN2A3P BTN2A1 BTN2A2 HMGN4
GH06J027126 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 10.8 +616.3 616316 23 HDGF MTA3 ZNF652 SP1 ZFX CC2D1A ELF3 CTCF ZKSCAN8 CBFA2T2 GC06P027588 HIST1H4I HIST1H2BJ ZKSCAN8 ABT1 HMGN4 ZNF322 BTN2A2 BTN2A3P BTN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG11 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HCG11 gene promoter:
  • FOXD1
  • Lhx3a
  • LHX3b
  • Nkx6-1
  • Pax-5
  • STAT1
  • STAT1alpha
  • STAT1beta
  • STAT2
  • STAT3

Genomic Locations for HCG11 Gene

Genomic Locations for HCG11 Gene
chr6:26,521,706-26,527,404
(GRCh38/hg38)
Size:
5,699 bases
Orientation:
Plus strand
chr6:26,521,934-26,527,621
(GRCh37/hg19)
Size:
5,688 bases
Orientation:
Plus strand

Genomic View for HCG11 Gene

Genes around HCG11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG11 Gene

Proteins for HCG11 Gene

No data available for DME Specific Peptides for HCG11 Gene

Domains & Families for HCG11 Gene

Gene Families for HCG11 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HCG11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG11 Gene

Function for HCG11 Gene

Phenotypes From GWAS Catalog for HCG11 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG11 Gene

Localization for HCG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG11 Gene

Pathways & Interactions for HCG11 Gene

PathCards logo

SuperPathways for HCG11 Gene

No Data Available

Interacting Proteins for HCG11 Gene

Gene Ontology (GO) - Biological Process for HCG11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG11 Gene

Drugs & Compounds for HCG11 Gene

No Compound Related Data Available

Transcripts for HCG11 Gene

mRNA/cDNA for HCG11 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for HCG11 Gene

HLA complex group 11 (non-protein coding):
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG11 Gene

No ASD Table

Relevant External Links for HCG11 Gene

GeneLoc Exon Structure for
HCG11
ECgene alternative splicing isoforms for
HCG11

Expression for HCG11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG11 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG11 Gene:

HCG11

SOURCE GeneReport for Unigene cluster for HCG11 Gene:

Hs.272939
genes like me logo Genes that share expression patterns with HCG11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG11 Gene

Orthologs for HCG11 Gene

Evolution for HCG11 Gene

ENSEMBL:
Gene Tree for HCG11 (if available)
TreeFam:
Gene Tree for HCG11 (if available)

No data available for Orthologs for HCG11 Gene

Paralogs for HCG11 Gene

No data available for Paralogs for HCG11 Gene

Variants for HCG11 Gene

Sequence variations from dbSNP and Humsavar for HCG11 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000110902 -- 26,527,026(+) T/C non_coding_transcript_variant
rs1000462795 -- 26,523,595(+) C/G non_coding_transcript_variant
rs1000514539 -- 26,523,263(+) A/G non_coding_transcript_variant
rs1001188167 -- 26,526,362(+) A/C non_coding_transcript_variant
rs1001219425 -- 26,525,993(+) G/A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCG11 Gene

Variant ID Type Subtype PubMed ID
nsv1023453 CNV gain 25217958
nsv965690 CNV duplication 23825009

Additional Variant Information for HCG11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG11

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG11 Gene

Disorders for HCG11 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG11 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search HCG11 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HCG11

genes like me logo Genes that share disorders with HCG11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG11 Gene

Publications for HCG11 Gene

  1. Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction. (PMID: 28677801) Xu Y … Li T (International journal of oncology 2017) 2 3 58
  2. Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer. (PMID: 27522256) Zhang Y … Li Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2016) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for HCG11 Gene

Sources for HCG11 Gene

Content
Loading form....