Aliases for HCG11 Gene

Subcategory (RNA class) for HCG11 Gene


Number of RNA Genes sources:

3 / 17

Aliases for HCG11 Gene

  • HLA Complex Group 11 2 3 5
  • HCG11 2 5 165
  • HLA Complex Group 11 (Non-Protein Coding) 2 3
  • BK14H9.3 2 3
  • NONHSAG043250.2 91
  • HSALNG0048782 164
  • CTA-14H9.3 3
  • FLJ14049 2
  • FLJ30357 2

External Ids for HCG11 Gene

Previous GeneCards Identifiers for HCG11 Gene

  • GC06U900732
  • GC06P026522
  • GC06P026523
  • GC06P026464
  • GC06P026525
  • GC06P026528
  • GC06P026534
  • GC06P026549
  • GC06P026592
  • GC06P026620
  • GC06P026632
  • GC06P026661
  • GC06P027351
  • GC06P027459
  • GC06P027579
  • GC06P028026
  • GC06P026658
  • GC06P026703
  • GC06P026749
  • GC06P026819
  • GC06P026916
  • GC06P027015
  • GC06P027087
  • GC06P027234

Summaries for HCG11 Gene

GeneCards Summary for HCG11 Gene

HCG11 (HLA Complex Group 11) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HCG11 include Prostate Cancer.

Additional gene information for HCG11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCG11 Gene

Genomics for HCG11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCG11 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCG11 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the HCG11 gene promoter:
  • FOXD1
  • Lhx3a
  • LHX3b
  • Nkx6-1
  • Pax-5
  • STAT1
  • STAT1alpha
  • STAT1beta
  • STAT2
  • STAT3

Genomic Locations for HCG11 Gene

Genomic Locations for HCG11 Gene
7,110 bases
Plus strand
5,688 bases
Plus strand

Genomic View for HCG11 Gene

Genes around HCG11 on UCSC Golden Path with GeneCards custom track
HCG11 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG11 Gene

Proteins for HCG11 Gene

No data available for DME Specific Peptides for HCG11 Gene

Domains & Families for HCG11 Gene

Gene Families for HCG11 Gene

genes like me logo Genes that share domains with HCG11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCG11 Gene

Function for HCG11 Gene

Phenotypes From GWAS Catalog for HCG11 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG11 Gene

Localization for HCG11 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCG11 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG11 Gene

Pathways & Interactions for HCG11 Gene

PathCards logo

SuperPathways for HCG11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCG11 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCG11 Gene

Drugs & Compounds for HCG11 Gene

No Compound Related Data Available

Transcripts for HCG11 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCG11 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DE27_9606 lncRNA 5688 3

HGNC: 17707,

RefSeq: NR_026790,

LNCipedia: HCG11:9,

URS0000BC8B78_9606 lncRNA 5696 2

Ensembl: ENST00000411553 (view in UCSC) ,

LNCipedia: HCG11:10,

URS00009B3EC3_9606 lncRNA 6020 2

LNCipedia: HCG11:1,


URS0000D5CDBA_9606 lncRNA 6925 1

LNCipedia: HCG11:7,

URS0000EA9D22_9606 lncRNA 5680 1

LncBook: HSALNT0289523,

HCG11 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCG11 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG11 Gene

No ASD Table

Relevant External Links for HCG11 Gene

GeneLoc Exon Structure for

Expression for HCG11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG11 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCG11

SOURCE GeneReport for Unigene cluster for HCG11 Gene:

genes like me logo Genes that share expression patterns with HCG11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG11 Gene

Orthologs for HCG11 Gene

Evolution for HCG11 Gene

Gene Tree for HCG11 (if available)
Gene Tree for HCG11 (if available)

No data available for Orthologs for HCG11 Gene

Paralogs for HCG11 Gene

No data available for Paralogs for HCG11 Gene

Variants for HCG11 Gene

Additional dbSNP identifiers (rs#s) for HCG11 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG11 Gene

Variant ID Type Subtype PubMed ID
nsv1023453 CNV gain 25217958
nsv965690 CNV duplication 23825009

Additional Variant Information for HCG11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCG11 Gene

Disorders for HCG11 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG11 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search HCG11 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with HCG11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG11 Gene

Publications for HCG11 Gene

  1. Modulation of IGF2BP1 by long non-coding RNA HCG11 suppresses apoptosis of hepatocellular carcinoma cells via MAPK signaling transduction. (PMID: 28677801) Xu Y … Li T (International journal of oncology 2017) 2 3
  2. Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer. (PMID: 27522256) Zhang Y … Li Y (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2016) 2 3
  3. Long non-coding RNA HCG11 suppresses the growth of glioma by cooperating with the miR-4425/MTA3 axis. (PMID: 30706982) Zhang L … Zhao J (The journal of gene medicine 2019) 3
  4. Long non-coding RNA HCG11 modulates glioma progression through cooperating with miR-496/CPEB3 axis. (PMID: 31310044) Chen Y … Wang Z (Cell proliferation 2019) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for HCG11 Gene

Sources for HCG11 Gene