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Aliases for HCFC1-AS1 Gene

Subcategory (RNA class) for HCFC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HCFC1-AS1 Gene

  • HCFC1 Antisense RNA 1 2 3 5
  • HCFC1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for HCFC1-AS1 Gene

Previous GeneCards Identifiers for HCFC1-AS1 Gene

  • GC00U933178
  • GC0XP153238

Summaries for HCFC1-AS1 Gene

GeneCards Summary for HCFC1-AS1 Gene

HCFC1-AS1 (HCFC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCFC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCFC1-AS1 Gene

Genomics for HCFC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for HCFC1-AS1 Gene

Promoters and enhancers for HCFC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ153965 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.8 1751 10 SP1 ZFX CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 ZNF687 NFRKB MYC TMEM187 HCFC1-AS1 HCFC1 SNORA70 SLC10A3 SNORA56 DKC1 PLXNA3 AVPR2 RPL10
GH0XJ153921 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 13 -42.6 -42634 9.1 HDGF SP1 ZFX ZKSCAN8 CBFA2T2 ZNF148 NKRF POLR2A MLLT1 ZNF121 ARHGAP4 TMEM187 HCFC1 FLNA SLC10A3 SNORA70 EMD DKC1 HCFC1-AS1 SNORA56
GH0XJ154056 Enhancer 1.2 Ensembl ENCODE 13.1 +95.3 95336 17 ELF3 MNT ZNF121 CEBPG RERE AHR TFE3 SP1 ZNF644 KAT8 TMEM187 IRAK1 HCFC1 HCFC1-AS1 PLXNA3 SLC10A3 ATP6AP1 PIR60620 MECP2
GH0XJ154045 Promoter/Enhancer 1.2 Ensembl ENCODE 12.6 +77.8 77759 2.7 ZNF121 PRDM1 PRDM10 ZIC2 ZSCAN4 REST CTCF SP1 ZBTB17 AEBP2 TMEM187 IRAK1 HCFC1 HCFC1-AS1 ATP6AP1 PIR60620 MECP2
GH0XJ154007 Enhancer 1 Ensembl ENCODE 13.9 +41.2 41244 8.4 CTCF ZNF121 CEBPG ZNF687 SP1 MLLT1 IKZF1 ZNF600 BACH1 IKZF2 TMEM187 HCFC1 HCFC1-AS1 F8A1 MIR718 IRAK1 MIR3202-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCFC1-AS1 Gene

Genomic Locations for HCFC1-AS1 Gene
chrX:153,968,765-153,970,091
(GRCh38/hg38)
Size:
1,327 bases
Orientation:
Plus strand
chrX:153,234,776-153,235,538
(GRCh37/hg19)
Size:
763 bases
Orientation:
Plus strand

Genomic View for HCFC1-AS1 Gene

Genes around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCFC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCFC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCFC1-AS1 Gene

Proteins for HCFC1-AS1 Gene

Post-translational modifications for HCFC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCFC1-AS1 Gene

Domains & Families for HCFC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCFC1-AS1 Gene

Function for HCFC1-AS1 Gene

Phenotypes From GWAS Catalog for HCFC1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCFC1-AS1 Gene

Localization for HCFC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCFC1-AS1 Gene

Pathways & Interactions for HCFC1-AS1 Gene

PathCards logo

SuperPathways for HCFC1-AS1 Gene

No Data Available

Interacting Proteins for HCFC1-AS1 Gene

Gene Ontology (GO) - Biological Process for HCFC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCFC1-AS1 Gene

Drugs & Compounds for HCFC1-AS1 Gene

No Compound Related Data Available

Transcripts for HCFC1-AS1 Gene

mRNA/cDNA for HCFC1-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCFC1-AS1 Gene

No ASD Table

Relevant External Links for HCFC1-AS1 Gene

GeneLoc Exon Structure for
HCFC1-AS1
ECgene alternative splicing isoforms for
HCFC1-AS1

Expression for HCFC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCFC1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HCFC1-AS1 Gene

This gene is overexpressed in Pituitary (x8.9).
genes like me logo Genes that share expression patterns with HCFC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCFC1-AS1 Gene

Orthologs for HCFC1-AS1 Gene

Evolution for HCFC1-AS1 Gene

ENSEMBL:
Gene Tree for HCFC1-AS1 (if available)
TreeFam:
Gene Tree for HCFC1-AS1 (if available)

No data available for Orthologs for HCFC1-AS1 Gene

Paralogs for HCFC1-AS1 Gene

No data available for Paralogs for HCFC1-AS1 Gene

Variants for HCFC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HCFC1-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001314634 -- 153,968,155(+) C/T upstream_transcript_variant
rs1001600478 -- 153,968,480(+) G/A upstream_transcript_variant
rs1002203457 -- 153,970,134(+) G/C downstream_transcript_variant
rs1002721404 -- 153,969,892(+) G/A non_coding_transcript_variant
rs1004553119 -- 153,968,518(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCFC1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33199 CNV gain+loss 17666407
esv33784 CNV gain+loss 17666407
nsv469867 CNV loss 16826518

Additional Variant Information for HCFC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCFC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCFC1-AS1 Gene

Disorders for HCFC1-AS1 Gene

Additional Disease Information for HCFC1-AS1

No disorders were found for HCFC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCFC1-AS1 Gene

Publications for HCFC1-AS1 Gene

No publications were found for HCFC1-AS1 Gene.

No data available for External Links for HCFC1-AS1 Gene

Products for HCFC1-AS1 Gene

Sources for HCFC1-AS1 Gene

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