Aliases for HCCAT5 Gene

Subcategory (RNA class) for HCCAT5 Gene


Number of RNA Genes sources:

3 / 17

Aliases for HCCAT5 Gene

  • Hepatocellular Carcinoma Associated Transcript 5 2 3 5
  • HCCAT5 2 5 165
  • Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding) 2 3
  • FJ222407 2 3
  • HTA 2 3
  • Hepatoma Associated Protein 3
  • Hepatoma Associated Gene 2
  • NONHSAG019951.2 91
  • HSALNG0112604 164

External Ids for HCCAT5 Gene

Previous GeneCards Identifiers for HCCAT5 Gene

  • GC16P073128

Summaries for HCCAT5 Gene

GeneCards Summary for HCCAT5 Gene

HCCAT5 (Hepatocellular Carcinoma Associated Transcript 5) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HCCAT5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HCCAT5 Gene

Genomics for HCCAT5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HCCAT5 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J073092 Enhancer 0.3 dbSUPER 600.7 -0.9 -857 0.7 ZNF548 HCCAT5 DHX38 MN297389 LOC107984814 ZFHX3
GH16J073091 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.0 2033 4.8 CREB1 GATAD2A ZNF629 PRDM10 TFE3 ZNF692 RCOR2 ZNF7 PRDM1 ZIC2 ZFHX3 HCCAT5 ENSG00000284675 LOC107984814
GH16J073082 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.4 -7448 6.2 GATAD2A ZNF629 ZIC2 CEBPA CEBPB ZBTB20 SP1 BRCA1 TSHZ1 ZSCAN5C ZFHX3 HCCAT5 MN297389 LOC107984814
GH16J073075 Enhancer 0.7 Ensembl 0.4 -16.0 -16048 2.6 CREB1 PRDM10 ZNF629 ZIC2 POLR2A ZNF211 ZNF10 ZXDB OSR2 ATF2 DHX38 ZFHX3 MN297389 HCCAT5 LOC107984814
GH16J073113 Enhancer 0.7 Ensembl ENCODE 0.4 +20.9 20851 4 PRDM1 CEBPB YBX1 MAX TCF7L2 USF2 ZNF366 HLF ENSG00000284675 HCCAT5 LOC107984814 ZFHX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCCAT5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HCCAT5 Gene

Genomic Locations for HCCAT5 Gene
6,989 bases
Plus strand
1,426 bases
Plus strand

Genomic View for HCCAT5 Gene

Genes around HCCAT5 on UCSC Golden Path with GeneCards custom track
HCCAT5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HCCAT5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCCAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCCAT5 Gene

Proteins for HCCAT5 Gene

Post-translational modifications for HCCAT5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCCAT5 Gene

Domains & Families for HCCAT5 Gene

Gene Families for HCCAT5 Gene

Suggested Antigen Peptide Sequences for HCCAT5 Gene

GenScript: Design optimal peptide antigens:
  • Hepatoma associated protein (B6EBE3_HUMAN)
genes like me logo Genes that share domains with HCCAT5: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HCCAT5 Gene

Function for HCCAT5 Gene

Phenotypes From GWAS Catalog for HCCAT5 Gene

Phenotypes for HCCAT5 Gene

genes like me logo Genes that share phenotypes with HCCAT5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCCAT5 Gene

Localization for HCCAT5 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCCAT5 gene
Compartment Confidence
nucleus 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
endoplasmic reticulum 1
endosome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCCAT5 Gene

Pathways & Interactions for HCCAT5 Gene

PathCards logo

SuperPathways for HCCAT5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HCCAT5 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HCCAT5 Gene

Drugs & Compounds for HCCAT5 Gene

No Compound Related Data Available

Transcripts for HCCAT5 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HCCAT5 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D130D_9606 lncRNA 1079 3

Ensembl: ENST00000569990 (view in UCSC) ,

LNCipedia: HCCAT5:2,


URS000075E6F4_9606 lncRNA 1078 2

HGNC: 48612,

RefSeq: NR_027756,

URS0000BD4EE8_9606 lncRNA 1029 2

Ensembl: ENST00000642127 (view in UCSC) ,

LNCipedia: HCCAT5:4,

URS0000EF21AA_9606 lncRNA 778 1

Ensembl: ENST00000659438 (view in UCSC) ,

URS0000EEF87D_9606 lncRNA 520 1

Ensembl: ENST00000662824 (view in UCSC) ,

HCCAT5 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HCCAT5 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCCAT5 Gene

No ASD Table

Relevant External Links for HCCAT5 Gene

GeneLoc Exon Structure for

Expression for HCCAT5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCCAT5 Gene

mRNA differential expression in normal tissues according to GTEx for HCCAT5 Gene

This gene is overexpressed in Artery - Tibial (x13.3), Brain - Spinal cord (cervical c-1) (x8.5), Artery - Aorta (x7.9), and Artery - Coronary (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HCCAT5

genes like me logo Genes that share expression patterns with HCCAT5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCCAT5 Gene

Orthologs for HCCAT5 Gene

Evolution for HCCAT5 Gene

Gene Tree for HCCAT5 (if available)
Gene Tree for HCCAT5 (if available)

No data available for Orthologs for HCCAT5 Gene

Paralogs for HCCAT5 Gene

No data available for Paralogs for HCCAT5 Gene

Variants for HCCAT5 Gene

Additional dbSNP identifiers (rs#s) for HCCAT5 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCCAT5 Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER inversion 18451855

Additional Variant Information for HCCAT5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HCCAT5 Gene

Disorders for HCCAT5 Gene

Additional Disease Information for HCCAT5

No disorders were found for HCCAT5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCCAT5 Gene

Publications for HCCAT5 Gene

  1. Molecular clone and functional study of a novel hepatoma associated gene. (PMID: 23314567) Liu Y … Li Y (International journal of oncology 2013) 2 3
  2. Identification of HTA as a novel-specific marker for human hepatocellular carcinoma. (PMID: 20130911) Liu Y … Li G (Journal of cancer research and clinical oncology 2010) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for HCCAT5 Gene

Sources for HCCAT5 Gene