Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCCAT5 Gene

Subcategory (RNA class) for HCCAT5 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HCCAT5 Gene

  • Hepatocellular Carcinoma Associated Transcript 5 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding) 2 3
  • Hepatoma Associated Protein 3
  • Hepatoma Associated Gene 2
  • FJ222407 3
  • HTA 3

External Ids for HCCAT5 Gene

Previous GeneCards Identifiers for HCCAT5 Gene

  • GC16P073128

Summaries for HCCAT5 Gene

GeneCards Summary for HCCAT5 Gene

HCCAT5 (Hepatocellular Carcinoma Associated Transcript 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCCAT5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCCAT5 Gene

Genomics for HCCAT5 Gene

GeneHancer (GH) Regulatory Elements for HCCAT5 Gene

Promoters and enhancers for HCCAT5 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J073091 Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +1.0 1032 2.8 ELF3 CEBPG TFE3 PRDM1 KAT8 ZBTB8A CEBPA GATAD2A ZNF7 RXRB HCCAT5 ENSG00000284675 ZFHX3
GH16J073092 Enhancer 0.3 dbSUPER 600.7 -0.9 -857 0.7 ZNF548 HCCAT5 DHX38 ENSG00000271009 ZFHX3
GH16J073095 Enhancer 1.1 Ensembl dbSUPER 0.7 +3.6 3558 1.8 NFIB SP7 PRDM1 MZF1 ZNF547 PKNOX1 CREB1 ZBTB8A ZNF544 ZNF600 ZFHX3 HCCAT5 ENSG00000284675
GH16J073062 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.1 -25132 9.8 HDGF SP1 ZNF652 ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 CEBPG RERE DHX38 C16orf47 ZFHX3 ENSG00000271009 TXNL4B HCCAT5
GH16J073082 Enhancer 1 ENCODE dbSUPER 0.4 -9.6 -9608 1.4 ZSCAN21 ZIC2 CEBPA GATAD2A ZEB2 ZNF629 BRCA1 CEBPB CHD2 JUN C16orf47 ZFHX3 HCCAT5 ENSG00000271009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HCCAT5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCCAT5 Gene

Genomic Locations for HCCAT5 Gene
6,989 bases
Plus strand
1,426 bases
Plus strand

Genomic View for HCCAT5 Gene

Genes around HCCAT5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCCAT5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCCAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCCAT5 Gene

Proteins for HCCAT5 Gene

Post-translational modifications for HCCAT5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCCAT5 Gene

Domains & Families for HCCAT5 Gene

Suggested Antigen Peptide Sequences for HCCAT5 Gene

GenScript: Design optimal peptide antigens:
  • Hepatoma associated protein (B6EBE3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for HCCAT5 Gene

Function for HCCAT5 Gene

Phenotypes From GWAS Catalog for HCCAT5 Gene

Phenotypes for HCCAT5 Gene

genes like me logo Genes that share phenotypes with HCCAT5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCCAT5 Gene

Localization for HCCAT5 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCCAT5 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCCAT5 Gene

Pathways & Interactions for HCCAT5 Gene

PathCards logo

SuperPathways for HCCAT5 Gene

No Data Available

Interacting Proteins for HCCAT5 Gene

Gene Ontology (GO) - Biological Process for HCCAT5 Gene


No data available for Pathways by source and SIGNOR curated interactions for HCCAT5 Gene

Drugs & Compounds for HCCAT5 Gene

No Compound Related Data Available

Transcripts for HCCAT5 Gene

mRNA/cDNA for HCCAT5 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HCCAT5 Gene

No ASD Table

Relevant External Links for HCCAT5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HCCAT5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCCAT5 Gene

mRNA differential expression in normal tissues according to GTEx for HCCAT5 Gene

This gene is overexpressed in Artery - Tibial (x13.3), Brain - Spinal cord (cervical c-1) (x8.5), Artery - Aorta (x7.9), and Artery - Coronary (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCCAT5 Gene:

genes like me logo Genes that share expression patterns with HCCAT5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCCAT5 Gene

Orthologs for HCCAT5 Gene

Evolution for HCCAT5 Gene

Gene Tree for HCCAT5 (if available)
Gene Tree for HCCAT5 (if available)

No data available for Orthologs for HCCAT5 Gene

Paralogs for HCCAT5 Gene

No data available for Paralogs for HCCAT5 Gene

Variants for HCCAT5 Gene

Sequence variations from dbSNP and Humsavar for HCCAT5 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1001108047 -- 73,092,491(+) G/A/T non_coding_transcript_variant
rs1002105594 -- 73,091,136(+) G/A upstream_transcript_variant
rs1002666217 -- 73,093,641(+) C/T non_coding_transcript_variant
rs1002849626 -- 73,091,125(+) G/C upstream_transcript_variant
rs1003186657 -- 73,092,485(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCCAT5 Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER inversion 18451855

Additional Variant Information for HCCAT5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCCAT5 Gene

Disorders for HCCAT5 Gene

Additional Disease Information for HCCAT5

No disorders were found for HCCAT5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCCAT5 Gene

Publications for HCCAT5 Gene

  1. Molecular clone and functional study of a novel hepatoma associated gene. (PMID: 23314567) Liu Y … Li Y (International journal of oncology 2013) 2 3 58
  2. Identification of HTA as a novel-specific marker for human hepatocellular carcinoma. (PMID: 20130911) Liu Y … Li G (Journal of cancer research and clinical oncology 2010) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for HCCAT5 Gene

Sources for HCCAT5 Gene

Loading form....