HBAP1 Gene (Pseudogene)

Hemoglobin Subunit Alpha Pseudogene 1

GC16P001368
GIFtS:
9
See more...

Aliases for HBAP1 Gene

Aliases for HBAP1 Gene

  • Hemoglobin Subunit Alpha Pseudogene 1 2 3
  • Hemoglobin, Alpha Pseudogene 1 2 3
  • HBA-T1 2 3
  • HBA3P 2 3
  • HBA3 2 3
  • Hemoglobin, Alpha (HBA) Pseudogene 5
  • Alpha Globin Pseudogene 1 3
  • Z84721.2 5

External Ids for HBAP1 Gene

Previous GeneCards Identifiers for HBAP1 Gene

  • GC16P000237
  • GC16P000158
  • GC16U901008
  • GC16P000190

Summaries for HBAP1 Gene

GeneCards Summary for HBAP1 Gene

HBAP1 (Hemoglobin Subunit Alpha Pseudogene 1) is a Pseudogene. Diseases associated with HBAP1 include Hemoglobin H Disease.

Gene Wiki entry for HBAP1 Gene

Additional gene information for HBAP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HBAP1 Gene

Genomics for HBAP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HBAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J000170 Enhancer 0.8 Ensembl 600.7 +1.1 1060 1.8 REST TFE3 IKZF1 ZIC2 RXRB IRF2 HDAC1 NKRF EGR1 CTBP1 HBAP1 lnc-HBM-1 HBZ HBA2 HBM
GH16J000169 Enhancer 0.3 Ensembl 600.7 -0.4 -440 0.4 NFIC HBAP1 lnc-HBM-1 HBA2 HBZP1 HBM
GH16J000163 Promoter/Enhancer 0.9 Ensembl dbSUPER 0.7 -3.8 -3840 0.8 EZH2 MGA POLR2A EGR1 SUPT5H VEZF1 SP1 GLIS2 GMEB1 HBZP1 NPRL3 HBAP1 HBA2 HBM
GH16J000165 Promoter 0.8 EPDnew Ensembl 0.7 -2.7 -2740 0.2 HNRNPL EZH2 HBM NPRL3 HBAP1 HBZP1 HBA2
GH16J000168 Promoter 0.6 Ensembl 0.7 -3.1 -3140 0.2 EZH2 SUPT5H GLIS2 GMEB1 HBAP1 HBZP1 HBA2 HBM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HBAP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HBAP1 Gene

Genomic Locations for HBAP1 Gene
chr16:168,641-169,452
(GRCh38/hg38)
Size:
812 bases
Orientation:
Plus strand

Genomic View for HBAP1 Gene

Genes around HBAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HBAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HBAP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HBAP1 Gene

Proteins for HBAP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HBAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HBAP1 Gene

Domains & Families for HBAP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HBAP1 Gene

Function for HBAP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for HBAP1 Gene

GENATLAS Biochemistry:
hemoglobin,alpha,pseudogene 1

Phenotypes From GWAS Catalog for HBAP1 Gene

Phenotypes for HBAP1 Gene

GenomeRNAi human phenotypes for HBAP1:
genes like me logo Genes that share phenotypes with HBAP1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HBAP1 Gene

Localization for HBAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HBAP1 Gene

Pathways & Interactions for HBAP1 Gene

PathCards logo

SuperPathways for HBAP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HBAP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HBAP1 Gene

Drugs & Compounds for HBAP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HBAP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HBAP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HBAP1 Gene

No ASD Table

Relevant External Links for HBAP1 Gene

GeneLoc Exon Structure for
HBAP1

Expression for HBAP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HBAP1 Gene

mRNA expression in normal human tissues for HBAP1 Gene
mRNA expression by GTEx for HBAP1 Gene
genes like me logo Genes that share expression patterns with HBAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HBAP1 Gene

Orthologs for HBAP1 Gene

Evolution for HBAP1 Gene

ENSEMBL:
Gene Tree for HBAP1 (if available)
TreeFam:
Gene Tree for HBAP1 (if available)

No data available for Orthologs for HBAP1 Gene

Paralogs for HBAP1 Gene

No data available for Paralogs for HBAP1 Gene

Variants for HBAP1 Gene

Additional Variant Information for HBAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HBAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HBAP1 Gene

Disorders for HBAP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HBAP1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
hemoglobin h disease
  • alpha-thalassemia
- elite association - COSMIC cancer census association via MalaCards
Search HBAP1 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with HBAP1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for HBAP1 Gene

Publications for HBAP1 Gene

  1. Dinucleotide repeat polymorphism at the human hemoglobin alpha-1 pseudo-gene (HBAP1). (PMID: 1549498) Fougerousse F … Beckmann JS (Nucleic acids research 1992) 2 3
  2. The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication. (PMID: 7407925) Proudfoot NJ … Maniatis T (Cell 1980) 2 3
  3. Dysfunctional alpha-globin gene in hemoglobin H disease in blacks. A dinucleotide deletion produces a frameshift and a termination codon. (PMID: 2831226) Safaya S … Rieder RF (The Journal of biological chemistry 1988) 3
  4. End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication. (PMID: 2411938) Hess J … Shen CK (Journal of molecular biology 1985) 3
  5. Distinctive sequence organization and functional programming of an Alu repeat promoter. (PMID: 6089189) Perez-Stable C … Shen CK (Proceedings of the National Academy of Sciences of the United States of America 1984) 3

ExternalLinks

View latest publications for HBAP1 gene in Mastermind

Products for HBAP1 Gene

Sources for HBAP1 Gene