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Aliases for HAR1B Gene

Subcategory (RNA class) for HAR1B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HAR1B Gene

  • Highly Accelerated Region 1B 2 3 5
  • Highly Accelerated Region 1B (Non-Protein-Coding RNA) 2 3
  • Highly Accelerated Region 1B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 65 2 3
  • Human Accelerated Region 1, Reverse 2 3
  • Non-Protein Coding RNA 65 2
  • NCRNA00065 3
  • LINC00065 3
  • HAR1R 3

External Ids for HAR1B Gene

Previous GeneCards Identifiers for HAR1B Gene

  • GC20U900287
  • GC20M061197
  • GC20M061726
  • GC20M058445

Summaries for HAR1B Gene

GeneCards Summary for HAR1B Gene

HAR1B (Highly Accelerated Region 1B) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HAR1B include Huntington Disease and Astrocytoma.

Additional gene information for HAR1B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAR1B Gene

Genomics for HAR1B Gene

GeneHancer (GH) Regulatory Elements for HAR1B Gene

Promoters and enhancers for HAR1B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J063101 Promoter/Enhancer 1.4 Ensembl ENCODE 616.6 -0.1 -124 1.8 ZNF687 SP7 CREM PRDM1 MLLT1 CREB1 GLIS2 EZH2 ZBTB8A ZNF600 HAR1B HAR1A ENSG00000274915 GC20P063103 GC20P063099 LOC105372719
GH20J063100 Promoter 0.7 Ensembl 600.7 +1.7 1670 0.2 PRDM10 ZBTB17 PRDM4 HAR1A ENSG00000274915 GC20P063099 GC20P063103 HAR1B
GH20J063112 Enhancer 0.9 Ensembl 10.3 -13.5 -13530 6.6 ELF3 RERE NFIB AHR NCOA3 TFE3 PPARG HDGF CREB1 ZNF7 LOC105372719 DIDO1 ENSG00000237371 MIR647 UCKL1 RPS21 GMEB2 HAR1B ENSG00000226332 HAR1A
GH20J063094 Enhancer 0.3 Ensembl 0.4 +9.4 9370 1.2 POLR2A ZGPAT GC20M063096 HAR1B LINC01056
GH20J063095 Enhancer 0.3 Ensembl 0.4 +7.9 7870 1.4 EZH2 GC20M063096 HAR1B LINC01056
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HAR1B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HAR1B gene promoter:
  • CUTL1
  • En-1
  • GATA-1
  • NCX
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c

Genomic Locations for HAR1B Gene

Genomic Locations for HAR1B Gene
chr20:63,092,256-63,102,371
(GRCh38/hg38)
Size:
10,116 bases
Orientation:
Minus strand
chr20:61,726,845-61,733,671
(GRCh37/hg19)
Size:
6,827 bases
Orientation:
Minus strand

Genomic View for HAR1B Gene

Genes around HAR1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAR1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAR1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAR1B Gene

Proteins for HAR1B Gene

No data available for DME Specific Peptides for HAR1B Gene

Domains & Families for HAR1B Gene

Gene Families for HAR1B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAR1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAR1B Gene

Function for HAR1B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAR1B Gene

Localization for HAR1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HAR1B Gene

Pathways & Interactions for HAR1B Gene

PathCards logo

SuperPathways for HAR1B Gene

No Data Available

Interacting Proteins for HAR1B Gene

Gene Ontology (GO) - Biological Process for HAR1B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAR1B Gene

Drugs & Compounds for HAR1B Gene

No Compound Related Data Available

Transcripts for HAR1B Gene

mRNA/cDNA for HAR1B Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for HAR1B Gene

Highly accelerated region 1B (non-protein coding):
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HAR1B Gene

No ASD Table

Relevant External Links for HAR1B Gene

GeneLoc Exon Structure for
HAR1B
ECgene alternative splicing isoforms for
HAR1B

Expression for HAR1B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HAR1B Gene

mRNA differential expression in normal tissues according to GTEx for HAR1B Gene

This gene is overexpressed in Testis (x5.3), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.2), Brain - Putamen (basal ganglia) (x4.0), and Brain - Anterior cingulate cortex (BA24) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of HAR1B Gene:

HAR1B

SOURCE GeneReport for Unigene cluster for HAR1B Gene:

Hs.635159
genes like me logo Genes that share expression patterns with HAR1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAR1B Gene

Orthologs for HAR1B Gene

Evolution for HAR1B Gene

ENSEMBL:
Gene Tree for HAR1B (if available)
TreeFam:
Gene Tree for HAR1B (if available)

No data available for Orthologs for HAR1B Gene

Paralogs for HAR1B Gene

No data available for Paralogs for HAR1B Gene

Variants for HAR1B Gene

Sequence variations from dbSNP and Humsavar for HAR1B Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1001031394 -- 63,098,481(-) A/T intron_variant
rs1001321404 -- 63,102,544(-) C/G upstream_transcript_variant
rs1001498972 -- 63,102,251(-) C/G/T non_coding_transcript_variant
rs1001718196 -- 63,101,958(-) C/G/T intron_variant
rs1002365174 -- 63,097,940(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HAR1B Gene

Variant ID Type Subtype PubMed ID
dgv68n68 CNV loss 17160897
esv1000562 CNV insertion 20482838
esv2537683 CNV loss 19546169
esv3433872 CNV duplication 20981092
esv3442438 CNV insertion 20981092
esv3893358 CNV loss 25118596
nsv3444 CNV insertion 18451855
nsv509783 CNV insertion 20534489
nsv513560 CNV insertion 21212237
nsv586535 CNV gain 21841781
nsv586537 CNV gain 21841781
nsv834028 CNV loss 17160897
nsv953305 CNV deletion 24416366
nsv9825 CNV gain 18304495

Additional Variant Information for HAR1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAR1B

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAR1B Gene

Disorders for HAR1B Gene

MalaCards: The human disease database

(4) MalaCards diseases for HAR1B Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
huntington disease
  • hd
astrocytoma
  • astrocytic tumor
alzheimer disease
  • ad
schizophrenia
  • sczd
- elite association - COSMIC cancer census association via MalaCards
Search HAR1B in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HAR1B

genes like me logo Genes that share disorders with HAR1B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HAR1B Gene

Publications for HAR1B Gene

  1. An RNA gene expressed during cortical development evolved rapidly in humans. (PMID: 16915236) Pollard KS … Haussler D (Nature 2006) 2 3 58
  2. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral PP … Mattick JS (Nucleic acids research 2011) 3 58

Products for HAR1B Gene

Sources for HAR1B Gene

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