Aliases for HAR1B Gene

Subcategory (RNA class) for HAR1B Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for HAR1B Gene

  • Highly Accelerated Region 1B 2 3 5
  • HAR1B 2 5 165
  • Highly Accelerated Region 1B (Non-Protein-Coding RNA) 2 3
  • Highly Accelerated Region 1B (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 65 2 3
  • Human Accelerated Region 1, Reverse 2 3
  • NCRNA00065 2 3
  • LINC00065 2 3
  • HAR1R 2 3
  • Non-Protein Coding RNA 65 2
  • NONHSAG032265.2 91
  • NONHSAG032266.2 91
  • HSALNG0131589 164

External Ids for HAR1B Gene

Previous GeneCards Identifiers for HAR1B Gene

  • GC20U900287
  • GC20M061197
  • GC20M061726
  • GC20M058445

Summaries for HAR1B Gene

GeneCards Summary for HAR1B Gene

HAR1B (Highly Accelerated Region 1B) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HAR1B include Huntington Disease and Hereditary Hemorrhagic Telangiectasia.

Rfam classification for HAR1B Gene

  • Highly accelerated region 1A/1B

Additional gene information for HAR1B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HAR1B Gene

Genomics for HAR1B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HAR1B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J063101 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 616.6 +0.2 230 2 CREB1 PRDM10 ZNF692 LARP7 PRDM1 ZIC2 ZSCAN4 POLR2A PATZ1 EZH2 HAR1B HAR1A ENSG00000274915 BHLHE23 YTHDF1
GH20J063091 Enhancer 0.6 ENCODE 0.4 +11.2 11167 0.2 RFX1 CTBP1 GABPA ESRRA PKNOX1 ZNF217 ELF1 KLF17 RCOR1 NCOA3 lnc-SLC17A9-6 HAR1B piR-53177-035 BHLHE23 YTHDF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HAR1B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the HAR1B gene promoter:
  • CUTL1
  • En-1
  • GATA-1
  • NCX
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c

Genomic Locations for HAR1B Gene

Genomic Locations for HAR1B Gene
chr20:63,090,806-63,102,631
(GRCh38/hg38)
Size:
11,826 bases
Orientation:
Minus strand
chr20:61,726,845-61,733,671
(GRCh37/hg19)
Size:
6,827 bases
Orientation:
Minus strand

Genomic View for HAR1B Gene

Genes around HAR1B on UCSC Golden Path with GeneCards custom track
HAR1B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HAR1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAR1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAR1B Gene

Proteins for HAR1B Gene

No data available for DME Specific Peptides for HAR1B Gene

Domains & Families for HAR1B Gene

Gene Families for HAR1B Gene

genes like me logo Genes that share domains with HAR1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HAR1B Gene

Function for HAR1B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAR1B Gene

Localization for HAR1B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HAR1B gene
Compartment Confidence
nucleus 1
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HAR1B Gene

Pathways & Interactions for HAR1B Gene

PathCards logo

SuperPathways for HAR1B Gene

No Data Available

Gene Ontology (GO) - Biological Process for HAR1B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HAR1B Gene

Drugs & Compounds for HAR1B Gene

No Compound Related Data Available

Transcripts for HAR1B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HAR1B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000015EEC8_9606 lncRNA 896 6

HGNC: 33118,

RefSeq: NR_003245,

Ensembl: ENST00000447910 (view in UCSC) ,

LNCipedia: HAR1B:2, HAR1B:8,

NONCODE: NONHSAT080827.2,

ENA: DQ860410.1:1..896:misc_RNA,

URS00002D35F2_9606 lncRNA 773 6

RefSeq: NR_152601,

Ensembl: ENST00000608031 (view in UCSC) ,

LncBook: HSALNT0270421,

LNCipedia: HAR1B:3,

NONCODE: NONHSAT189976.1,

ENA: DQ860411.1:1..773:misc_RNA,

URS0000EEDE12_9606 lncRNA 3323 1

Ensembl: ENST00000657642 (view in UCSC) ,

URS0000E6F58D_9606 lncRNA 1837 1

Ensembl: ENST00000651861 (view in UCSC) ,

URS0000EF4723_9606 lncRNA 1264 1

Ensembl: ENST00000658410 (view in UCSC) ,

HAR1B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HAR1B Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HAR1B Gene

No ASD Table

Relevant External Links for HAR1B Gene

GeneLoc Exon Structure for
HAR1B

Expression for HAR1B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HAR1B Gene

mRNA differential expression in normal tissues according to GTEx for HAR1B Gene

This gene is overexpressed in Testis (x5.3), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.2), Brain - Putamen (basal ganglia) (x4.0), and Brain - Anterior cingulate cortex (BA24) (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HAR1B

SOURCE GeneReport for Unigene cluster for HAR1B Gene:

Hs.635159
genes like me logo Genes that share expression patterns with HAR1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAR1B Gene

Orthologs for HAR1B Gene

Evolution for HAR1B Gene

ENSEMBL:
Gene Tree for HAR1B (if available)
TreeFam:
Gene Tree for HAR1B (if available)

No data available for Orthologs for HAR1B Gene

Paralogs for HAR1B Gene

No data available for Paralogs for HAR1B Gene

Variants for HAR1B Gene

Additional dbSNP identifiers (rs#s) for HAR1B Gene

Structural Variations from Database of Genomic Variants (DGV) for HAR1B Gene

Variant ID Type Subtype PubMed ID
dgv68n68 CNV loss 17160897
esv1000562 CNV insertion 20482838
esv2537683 CNV loss 19546169
esv3433872 CNV duplication 20981092
esv3442438 CNV insertion 20981092
esv3893358 CNV loss 25118596
nsv3444 CNV insertion 18451855
nsv509783 CNV insertion 20534489
nsv513560 CNV insertion 21212237
nsv586535 CNV gain 21841781
nsv586537 CNV gain 21841781
nsv834028 CNV loss 17160897
nsv953305 CNV deletion 24416366
nsv9825 CNV gain 18304495

Additional Variant Information for HAR1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAR1B

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HAR1B Gene

Disorders for HAR1B Gene

MalaCards: The human disease database

(5) MalaCards diseases for HAR1B Gene - From: LncRNADisease and DISEASES

- elite association - COSMIC cancer census association via MalaCards
Search HAR1B in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with HAR1B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HAR1B Gene

Publications for HAR1B Gene

  1. An RNA gene expressed during cortical development evolved rapidly in humans. (PMID: 16915236) Pollard KS … Haussler D (Nature 2006) 2 3
  2. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral PP … Mattick JS (Nucleic acids research 2011) 3

Products for HAR1B Gene

Sources for HAR1B Gene