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Aliases for HAGLROS Gene

Subcategory (RNA class) for HAGLROS Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for HAGLROS Gene

  • HAGLR Opposite Strand LncRNA 2 3 5
  • HAGLR Opposite Strand (Non-Protein Coding) 2 3

External Ids for HAGLROS Gene

ORGUL Members for HAGLROS Gene

Summaries for HAGLROS Gene

GeneCards Summary for HAGLROS Gene

HAGLROS (HAGLR Opposite Strand LncRNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HAGLROS include Thyroid Cancer, Nonmedullary, 1 and Gastric Cancer.

Additional gene information for HAGLROS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLROS Gene

Genomics for HAGLROS Gene

GeneHancer (GH) Regulatory Elements for HAGLROS Gene

Promoters and enhancers for HAGLROS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J176177 Promoter/Enhancer 1.2 Ensembl ENCODE 632.3 +0.4 362 1.5 GLIS2 ZBTB8A CTBP1 NRF1 KLF9 EZH2 ZBTB26 USF1 ZBTB17 ZFHX2 HAGLROS HAGLR HOXD1 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD11 HOXD12 HOXD10
GH02J176171 Promoter/Enhancer 1 EPDnew ENCODE 33.4 -6.3 -6266 0.2 SP1 EZH2 ZNF143 SIN3A HOXD3 HAGLROS HOXD-AS2 HOXD10 HOXD11 HOXD8 HOXD12 HOXD9 HOXD13 ENSG00000272729
GH02J176159 Promoter/Enhancer 1 Ensembl ENCODE 29.2 -16.5 -16504 3 ELF3 AHR EZH2 USF1 GABPB1 PRDM4 USF2 HAGLROS HAGLR HOXD1 HOXD-AS2 HOXD9 HOXD3 HOXD8 HOXD10 HOXD11 HOXD13
GH02J176127 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 -43.4 -43436 14.3 SP1 ZFX CC2D1A ELF3 CTCF NKRF ZNF121 CEBPG GTF2F1 ZNF384 HOXD4 HOXD8 HOXD3 HOXD1 HAGLR HOXD9 HAGLROS HOXD11 ATF2 HOXD-AS2
GH02J176104 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl 7.3 -72.7 -72733 1.2 YY1 SP7 PRDM1 MZF1 GLIS2 PKNOX1 ZBTB8A PRDM10 ZSCAN4 ZEB2 HOXD11 HOXD10 HOXD13 HAGLROS HOXD9 HOXD8 HOXD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HAGLROS on UCSC Golden Path with GeneCards custom track

Genomic Locations for HAGLROS Gene

Genomic Locations for HAGLROS Gene
chr2:176,177,717-176,179,009
(GRCh38/hg38)
Size:
1,293 bases
Orientation:
Plus strand

Genomic View for HAGLROS Gene

Genes around HAGLROS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAGLROS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAGLROS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLROS Gene

Proteins for HAGLROS Gene

Post-translational modifications for HAGLROS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAGLROS Gene

Domains & Families for HAGLROS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAGLROS Gene

Function for HAGLROS Gene

Phenotypes From GWAS Catalog for HAGLROS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAGLROS Gene

Localization for HAGLROS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HAGLROS Gene

Pathways & Interactions for HAGLROS Gene

PathCards logo

SuperPathways for HAGLROS Gene

No Data Available

Interacting Proteins for HAGLROS Gene

Gene Ontology (GO) - Biological Process for HAGLROS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAGLROS Gene

Drugs & Compounds for HAGLROS Gene

No Compound Related Data Available

Transcripts for HAGLROS Gene

mRNA/cDNA for HAGLROS Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLROS Gene

No ASD Table

Relevant External Links for HAGLROS Gene

GeneLoc Exon Structure for
HAGLROS
ECgene alternative splicing isoforms for
HAGLROS

Expression for HAGLROS Gene

NURSA nuclear receptor signaling pathways regulating expression of HAGLROS Gene:

HAGLROS
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAGLROS Gene

Orthologs for HAGLROS Gene

Evolution for HAGLROS Gene

ENSEMBL:
Gene Tree for HAGLROS (if available)
TreeFam:
Gene Tree for HAGLROS (if available)

No data available for Orthologs for HAGLROS Gene

Paralogs for HAGLROS Gene

No data available for Paralogs for HAGLROS Gene

Variants for HAGLROS Gene

Sequence variations from dbSNP and Humsavar for HAGLROS Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000929407 -- 176,176,214(+) G/A upstream_transcript_variant
rs1000981774 -- 176,176,419(+) T/C upstream_transcript_variant
rs1001145882 -- 176,177,161(+) G/A upstream_transcript_variant
rs1001366098 -- 176,177,508(+) G/A upstream_transcript_variant
rs1002332562 -- 176,177,839(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HAGLROS Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138

Additional Variant Information for HAGLROS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAGLROS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAGLROS Gene

Disorders for HAGLROS Gene

MalaCards: The human disease database

(2) MalaCards diseases for HAGLROS Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HAGLROS

genes like me logo Genes that share disorders with HAGLROS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HAGLROS Gene

Publications for HAGLROS Gene

  1. STAT3-induced lncRNA HAGLROS overexpression contributes to the malignant progression of gastric cancer cells via mTOR signal-mediated inhibition of autophagy. (PMID: 29329543) Chen JF … Yang F (Molecular cancer 2018) 3 58
  2. Long noncoding RNA HAGLROS regulates cell apoptosis and autophagy in lipopolysaccharides-induced WI-38 cells via modulating miR-100/NF-κB axis. (PMID: 29673591) Liu M … Chen E (Biochemical and biophysical research communications 2018) 3 58
  3. GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. (PMID: 23535730) Pharoah PD … Sellers TA (Nature genetics 2013) 3 58
  4. A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24. (PMID: 20852632) Goode EL … Ovarian Cancer Association Consortium (OCAC) (Nature genetics 2010) 3 58

Products for HAGLROS Gene

Sources for HAGLROS Gene

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